Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACF8YQ_RS02775 Genome accession   NZ_CP172297
Coordinates   601410..601934 (+) Length   174 a.a.
NCBI ID   WP_113880451.1    Uniprot ID   -
Organism   Marinobacter sp. W-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 596410..606934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8YQ_RS02760 rplQ 596524..596922 (+) 399 WP_022992024.1 50S ribosomal protein L17 -
  ACF8YQ_RS02765 uvrA 596995..599817 (-) 2823 WP_396622528.1 excinuclease ABC subunit UvrA -
  ACF8YQ_RS02770 - 599982..601352 (+) 1371 WP_396622529.1 MFS transporter -
  ACF8YQ_RS02775 ssb 601410..601934 (+) 525 WP_113880451.1 single-stranded DNA-binding protein Machinery gene
  ACF8YQ_RS02780 ntrC 601991..603421 (-) 1431 WP_153741280.1 nitrogen regulation protein NR(I) -
  ACF8YQ_RS02785 glnL 603418..604542 (-) 1125 WP_394133339.1 nitrogen regulation protein NR(II) -
  ACF8YQ_RS02790 - 604762..605286 (-) 525 WP_222447318.1 DUF4124 domain-containing protein -
  ACF8YQ_RS02795 glnA 605483..606886 (-) 1404 WP_396622530.1 glutamate--ammonia ligase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19070.16 Da        Isoelectric Point: 4.9464

>NTDB_id=1066074 ACF8YQ_RS02775 WP_113880451.1 601410..601934(+) (ssb) [Marinobacter sp. W-8]
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQLVPKTEWHRVVLFGKVAEVAGQYLRKGSKVYIE
GKLQTRKWQNKEGQDVYTTEVVVDINGQMQMLDSRGSEGGMNPGAPQGRPQQQPQYNAPPQQGGQAGGYNNPAPQQQGGG
MPEPIDDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1066074 ACF8YQ_RS02775 WP_113880451.1 601410..601934(+) (ssb) [Marinobacter sp. W-8]
ATGGCACGAGGCGTAAACAAGGTAATTCTCATTGGTAACCTGGGGCAGGACCCGGACACCCGCTATACCCCCAACGGCAA
TGCCGTGGTCAACCTGAACCTTGCCACAGACGAGAGTTACAAGGATCGCCAGACCGGACAGCTGGTGCCGAAGACCGAAT
GGCATCGGGTTGTGTTGTTCGGCAAGGTGGCTGAGGTGGCTGGGCAATACCTGCGCAAAGGCTCCAAGGTCTACATTGAA
GGCAAGCTGCAGACCCGGAAATGGCAGAACAAGGAAGGGCAGGATGTCTACACCACCGAAGTGGTTGTGGATATCAATGG
CCAGATGCAGATGCTGGACAGCCGTGGCTCTGAGGGCGGTATGAATCCAGGGGCGCCCCAGGGACGGCCGCAGCAACAGC
CGCAATACAATGCGCCGCCCCAGCAGGGTGGACAGGCTGGTGGCTACAACAACCCGGCACCCCAGCAGCAAGGTGGTGGC
ATGCCTGAGCCGATTGATGATTTTGACGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.714

100

0.58
  ssb Glaesserella parasuis strain SC1401

53.514

100

0.569
  ssb Neisseria meningitidis MC58

44.444

100

0.46
  ssb Neisseria gonorrhoeae MS11

44.444

100

0.46

Multiple sequence alignment