Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACHZK0_RS26730 Genome accession   NZ_CP172246
Coordinates   5197455..5197976 (-) Length   173 a.a.
NCBI ID   WP_395761061.1    Uniprot ID   -
Organism   Bacillus sp. 3G2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5192455..5202976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZK0_RS26710 (ACHZK0_26710) rplI 5193666..5194112 (-) 447 WP_061679600.1 50S ribosomal protein L9 -
  ACHZK0_RS26715 (ACHZK0_26715) - 5194109..5196082 (-) 1974 WP_270606925.1 DHH family phosphoesterase -
  ACHZK0_RS26720 (ACHZK0_26720) - 5196161..5197096 (-) 936 WP_395761747.1 YybS family protein -
  ACHZK0_RS26725 (ACHZK0_26725) rpsR 5197177..5197410 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  ACHZK0_RS26730 (ACHZK0_26730) ssbA 5197455..5197976 (-) 522 WP_395761061.1 single-stranded DNA-binding protein Machinery gene
  ACHZK0_RS26735 (ACHZK0_26735) rpsF 5198003..5198293 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  ACHZK0_RS26740 (ACHZK0_26740) ychF 5198485..5199585 (-) 1101 WP_000524656.1 redox-regulated ATPase YchF -
  ACHZK0_RS26745 (ACHZK0_26745) - 5199700..5199897 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  ACHZK0_RS26750 (ACHZK0_26750) - 5199927..5200808 (-) 882 WP_395761062.1 mechanosensitive ion channel family protein -
  ACHZK0_RS26755 (ACHZK0_26755) yyaC 5201068..5201664 (+) 597 WP_262742586.1 spore protease YyaC -
  ACHZK0_RS26760 (ACHZK0_26760) spo0J 5201685..5202536 (-) 852 WP_262742585.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18835.66 Da        Isoelectric Point: 4.9222

>NTDB_id=1065926 ACHZK0_RS26730 WP_395761061.1 5197455..5197976(-) (ssbA) [Bacillus sp. 3G2]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFLNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1065926 ACHZK0_RS26730 WP_395761061.1 5197455..5197976(-) (ssbA) [Bacillus sp. 3G2]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGTAACCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTTAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382

Multiple sequence alignment