Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACHP5K_RS21525 Genome accession   NZ_CP172173
Coordinates   4376310..4376846 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain GF124.3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4364029..4400046 4376310..4376846 within 0


Gene organization within MGE regions


Location: 4364029..4400046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5K_RS21490 (ACHP5K_21490) yjcB 4364029..4364310 (+) 282 WP_001295689.1 YjcB family protein -
  ACHP5K_RS21495 (ACHP5K_21495) - 4364718..4365539 (+) 822 WP_001272932.1 abortive infection system antitoxin AbiGi family protein -
  ACHP5K_RS21500 (ACHP5K_21500) avs4 4366078..4370841 (-) 4764 WP_395760402.1 AVAST type 4 anti-phage nuclease Avs4 -
  ACHP5K_RS21505 (ACHP5K_21505) - 4370917..4371336 (-) 420 WP_001062122.1 hypothetical protein -
  ACHP5K_RS21510 (ACHP5K_21510) - 4371329..4373362 (-) 2034 WP_000807722.1 hypothetical protein -
  ACHP5K_RS21515 (ACHP5K_21515) - 4373379..4374917 (-) 1539 WP_001333349.1 site-specific integrase -
  ACHP5K_RS21520 (ACHP5K_21520) - 4374904..4376151 (-) 1248 WP_000414651.1 site-specific integrase -
  ACHP5K_RS21525 (ACHP5K_21525) ssb 4376310..4376846 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACHP5K_RS21530 (ACHP5K_21530) uvrA 4377100..4379922 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  ACHP5K_RS21535 (ACHP5K_21535) yjbR 4379957..4380313 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ACHP5K_RS21540 (ACHP5K_21540) yjbQ 4380317..4380733 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACHP5K_RS21545 (ACHP5K_21545) aphA 4380844..4381557 (-) 714 WP_001226928.1 acid phosphatase AphA -
  ACHP5K_RS21550 (ACHP5K_21550) yjbS 4381959..4382162 (+) 204 WP_001321562.1 protein YjbS -
  ACHP5K_RS21555 (ACHP5K_21555) tyrB 4382664..4383857 (-) 1194 WP_000486985.1 aromatic amino acid transaminase -
  ACHP5K_RS21560 (ACHP5K_21560) alr 4384110..4385189 (-) 1080 WP_001147328.1 alanine racemase -
  ACHP5K_RS21565 (ACHP5K_21565) dnaB 4385242..4386657 (-) 1416 WP_000918363.1 replicative DNA helicase -
  ACHP5K_RS21570 (ACHP5K_21570) qorA 4386740..4387723 (+) 984 WP_000235508.1 quinone oxidoreductase -
  ACHP5K_RS21575 (ACHP5K_21575) pspG 4387889..4388131 (-) 243 WP_000891404.1 envelope stress response protein PspG -
  ACHP5K_RS21580 (ACHP5K_21580) dusA 4388265..4389302 (-) 1038 WP_001298868.1 tRNA dihydrouridine(20/20a) synthase DusA -
  ACHP5K_RS21585 (ACHP5K_21585) - 4389665..4390650 (-) 986 Protein_4229 DUF2713 domain-containing protein -
  ACHP5K_RS21590 (ACHP5K_21590) zur 4390968..4391483 (+) 516 WP_001295691.1 zinc uptake transcriptional repressor Zur -
  ACHP5K_RS21595 (ACHP5K_21595) yjbJ 4391525..4391734 (-) 210 WP_001030593.1 CsbD family protein -
  ACHP5K_RS21600 (ACHP5K_21600) dinF 4391850..4393175 (-) 1326 WP_001326646.1 MATE family efflux transporter DinF -
  ACHP5K_RS21605 (ACHP5K_21605) lexA 4393248..4393856 (-) 609 WP_000646078.1 transcriptional repressor LexA -
  ACHP5K_RS21610 (ACHP5K_21610) dgkA 4393966..4394334 (-) 369 WP_000002907.1 diacylglycerol kinase -
  ACHP5K_RS21615 (ACHP5K_21615) plsB 4394505..4396928 (+) 2424 WP_000017354.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  ACHP5K_RS21620 (ACHP5K_21620) ubiA 4397083..4397955 (-) 873 WP_000455227.1 4-hydroxybenzoate octaprenyltransferase -
  ACHP5K_RS21625 (ACHP5K_21625) ubiC 4397968..4398465 (-) 498 WP_001326644.1 chorismate lyase -
  ACHP5K_RS21630 (ACHP5K_21630) - 4398688..4398888 (-) 201 Protein_4238 hypothetical protein -
  ACHP5K_RS21635 (ACHP5K_21635) - 4398946..4399643 (+) 698 WP_095033700.1 IS1-like element IS1B family transposase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1065597 ACHP5K_RS21525 WP_000168305.1 4376310..4376846(-) (ssb) [Escherichia coli strain GF124.3]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1065597 ACHP5K_RS21525 WP_000168305.1 4376310..4376846(-) (ssb) [Escherichia coli strain GF124.3]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment