Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACHW6Z_RS13805 | Genome accession | NZ_CP172123 |
| Coordinates | 3030255..3030725 (+) | Length | 156 a.a. |
| NCBI ID | WP_395601047.1 | Uniprot ID | - |
| Organism | Providencia rettgeri strain M-D3G1-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2981574..3034278 | 3030255..3030725 | within | 0 |
Gene organization within MGE regions
Location: 2981574..3034278
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACHW6Z_RS13470 | - | 2981574..2983505 (+) | 1932 | WP_272673668.1 | type I secretion system permease/ATPase | - |
| ACHW6Z_RS13475 | - | 2984079..2984486 (-) | 408 | WP_395601015.1 | transcriptional regulator | - |
| ACHW6Z_RS13480 | - | 2984495..2984860 (-) | 366 | WP_349482107.1 | DUF6516 family protein | - |
| ACHW6Z_RS13485 | - | 2985201..2986118 (-) | 918 | WP_395601016.1 | phage antirepressor N-terminal domain-containing protein | - |
| ACHW6Z_RS13490 | - | 2986188..2986346 (-) | 159 | WP_144141777.1 | Arc family DNA-binding protein | - |
| ACHW6Z_RS13495 | - | 2986461..2986706 (+) | 246 | WP_131679895.1 | Arc family DNA-binding protein | - |
| ACHW6Z_RS13500 | - | 2986756..2988495 (+) | 1740 | WP_395601017.1 | AAA family ATPase | - |
| ACHW6Z_RS13505 | - | 2988562..2989422 (+) | 861 | WP_395601018.1 | DNA adenine methylase | - |
| ACHW6Z_RS13510 | - | 2989515..2989886 (-) | 372 | WP_395601019.1 | hypothetical protein | - |
| ACHW6Z_RS13515 | - | 2990082..2991230 (+) | 1149 | WP_395601020.1 | hypothetical protein | - |
| ACHW6Z_RS13520 | - | 2991273..2993294 (-) | 2022 | WP_395601021.1 | hypothetical protein | - |
| ACHW6Z_RS13525 | - | 2993356..2995830 (-) | 2475 | WP_395601022.1 | host specificity factor TipJ family phage tail protein | - |
| ACHW6Z_RS13530 | - | 2995817..2996209 (-) | 393 | WP_395601023.1 | NlpC/P60 family protein | - |
| ACHW6Z_RS13535 | - | 2996209..2996643 (-) | 435 | WP_349483419.1 | DUF1833 family protein | - |
| ACHW6Z_RS13540 | - | 2996673..2997158 (-) | 486 | WP_272693503.1 | hypothetical protein | - |
| ACHW6Z_RS13545 | - | 2997283..2997576 (+) | 294 | WP_272693502.1 | DUF1883 domain-containing protein | - |
| ACHW6Z_RS13550 | - | 2997556..2997735 (-) | 180 | WP_210789348.1 | Rrf2 family transcriptional regulator | - |
| ACHW6Z_RS13555 | - | 2997748..3000975 (-) | 3228 | WP_395601024.1 | tape measure protein | - |
| ACHW6Z_RS13560 | - | 3001486..3002172 (-) | 687 | WP_349482114.1 | DUF6246 family protein | - |
| ACHW6Z_RS13565 | - | 3002221..3002976 (-) | 756 | WP_395601025.1 | phage tail tube protein | - |
| ACHW6Z_RS13570 | - | 3003045..3003413 (-) | 369 | WP_395601026.1 | hypothetical protein | - |
| ACHW6Z_RS13575 | - | 3003410..3003847 (-) | 438 | WP_395601027.1 | HK97 gp10 family phage protein | - |
| ACHW6Z_RS13580 | - | 3003849..3004217 (-) | 369 | WP_395601028.1 | hypothetical protein | - |
| ACHW6Z_RS13585 | - | 3004214..3004585 (-) | 372 | WP_136135542.1 | hypothetical protein | - |
| ACHW6Z_RS13590 | - | 3004569..3004778 (-) | 210 | WP_395601029.1 | hypothetical protein | - |
| ACHW6Z_RS13595 | - | 3004788..3005852 (-) | 1065 | WP_395601030.1 | major capsid protein | - |
| ACHW6Z_RS13600 | - | 3005863..3006303 (-) | 441 | WP_126437294.1 | hypothetical protein | - |
| ACHW6Z_RS13605 | - | 3006307..3007683 (-) | 1377 | WP_395601031.1 | DUF2213 domain-containing protein | - |
| ACHW6Z_RS13610 | - | 3007702..3007953 (-) | 252 | WP_210848410.1 | hypothetical protein | - |
| ACHW6Z_RS13615 | - | 3007953..3008960 (-) | 1008 | WP_349482118.1 | phage minor head protein | - |
| ACHW6Z_RS13620 | - | 3008914..3010356 (-) | 1443 | WP_349483400.1 | anti-CBASS protein Acb1 family protein | - |
| ACHW6Z_RS13625 | - | 3010369..3011664 (-) | 1296 | WP_349482120.1 | phage terminase large subunit | - |
| ACHW6Z_RS13630 | - | 3011648..3012073 (-) | 426 | WP_096864261.1 | terminase small subunit | - |
| ACHW6Z_RS13635 | - | 3012132..3012389 (-) | 258 | WP_349487211.1 | DUF2560 family protein | - |
| ACHW6Z_RS13640 | - | 3012524..3012760 (-) | 237 | WP_349482122.1 | hypothetical protein | - |
| ACHW6Z_RS13645 | - | 3012980..3013747 (-) | 768 | WP_349482123.1 | KilA-N domain-containing protein | - |
| ACHW6Z_RS13650 | - | 3014068..3014292 (-) | 225 | WP_349487212.1 | hypothetical protein | - |
| ACHW6Z_RS13655 | - | 3014292..3014741 (-) | 450 | WP_349487537.1 | lysis protein | - |
| ACHW6Z_RS13660 | - | 3014743..3015225 (-) | 483 | WP_395601032.1 | TIGR02594 family protein | - |
| ACHW6Z_RS13665 | - | 3015218..3015535 (-) | 318 | WP_198861227.1 | phage holin, lambda family | - |
| ACHW6Z_RS13670 | - | 3015634..3015930 (-) | 297 | WP_226693965.1 | DUF4406 domain-containing protein | - |
| ACHW6Z_RS13675 | - | 3016179..3016562 (-) | 384 | WP_140180797.1 | antiterminator Q family protein | - |
| ACHW6Z_RS13680 | - | 3017041..3017634 (-) | 594 | WP_395601033.1 | recombination protein NinG | - |
| ACHW6Z_RS13685 | - | 3017695..3018069 (-) | 375 | WP_349482127.1 | hypothetical protein | - |
| ACHW6Z_RS13690 | - | 3018191..3018373 (-) | 183 | WP_349482128.1 | hypothetical protein | - |
| ACHW6Z_RS13695 | - | 3018370..3018813 (-) | 444 | WP_349482129.1 | recombination protein NinB | - |
| ACHW6Z_RS13700 | - | 3018823..3019074 (-) | 252 | WP_349482130.1 | DUF4752 family protein | - |
| ACHW6Z_RS13705 | - | 3019067..3019240 (-) | 174 | WP_395601034.1 | Lar family restriction alleviation protein | - |
| ACHW6Z_RS13710 | - | 3019241..3019450 (-) | 210 | WP_395606182.1 | hypothetical protein | - |
| ACHW6Z_RS13715 | - | 3019485..3019754 (-) | 270 | WP_395601035.1 | hypothetical protein | - |
| ACHW6Z_RS13720 | - | 3019772..3019984 (-) | 213 | WP_154601188.1 | Lar family restriction alleviation protein | - |
| ACHW6Z_RS13725 | - | 3020010..3021380 (-) | 1371 | WP_395601036.1 | replicative DNA helicase | - |
| ACHW6Z_RS13730 | - | 3021383..3022303 (-) | 921 | WP_395601037.1 | replication protein | - |
| ACHW6Z_RS13735 | - | 3022296..3022421 (-) | 126 | WP_255254512.1 | hypothetical protein | - |
| ACHW6Z_RS13740 | - | 3022512..3022859 (-) | 348 | WP_395601038.1 | hypothetical protein | - |
| ACHW6Z_RS13745 | - | 3022965..3023174 (-) | 210 | WP_006657610.1 | helix-turn-helix transcriptional regulator | - |
| ACHW6Z_RS13750 | - | 3023282..3023926 (+) | 645 | WP_349483390.1 | LexA family transcriptional regulator | - |
| ACHW6Z_RS13755 | - | 3024048..3024182 (+) | 135 | WP_395601039.1 | hypothetical protein | - |
| ACHW6Z_RS13760 | - | 3024197..3025150 (+) | 954 | WP_395601040.1 | hypothetical protein | - |
| ACHW6Z_RS13765 | - | 3025513..3025827 (+) | 315 | WP_395601041.1 | hypothetical protein | - |
| ACHW6Z_RS13770 | - | 3025864..3027228 (+) | 1365 | WP_395601042.1 | hypothetical protein | - |
| ACHW6Z_RS13775 | - | 3027351..3027590 (+) | 240 | WP_395606121.1 | hypothetical protein | - |
| ACHW6Z_RS13780 | - | 3027896..3028123 (+) | 228 | WP_395601044.1 | hypothetical protein | - |
| ACHW6Z_RS13785 | - | 3028125..3028388 (+) | 264 | WP_109911113.1 | hypothetical protein | - |
| ACHW6Z_RS13790 | - | 3028605..3028871 (+) | 267 | WP_048606419.1 | hypothetical protein | - |
| ACHW6Z_RS13795 | - | 3029013..3029366 (+) | 354 | WP_395601045.1 | hypothetical protein | - |
| ACHW6Z_RS13800 | - | 3029382..3030254 (+) | 873 | WP_395601046.1 | ATP-binding protein | - |
| ACHW6Z_RS13805 | ssb | 3030255..3030725 (+) | 471 | WP_395601047.1 | single-stranded DNA-binding protein | Machinery gene |
| ACHW6Z_RS13810 | - | 3030738..3031292 (+) | 555 | WP_349483382.1 | hypothetical protein | - |
| ACHW6Z_RS13815 | - | 3031648..3031932 (+) | 285 | WP_272517748.1 | hypothetical protein | - |
| ACHW6Z_RS13820 | - | 3031929..3032444 (+) | 516 | WP_349483381.1 | hypothetical protein | - |
| ACHW6Z_RS13825 | - | 3032444..3032737 (+) | 294 | WP_349483380.1 | cyclic-phosphate processing receiver domain-containing protein | - |
| ACHW6Z_RS13830 | - | 3033232..3034278 (+) | 1047 | WP_395601048.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17513.55 Da Isoelectric Point: 7.2020
>NTDB_id=1065397 ACHW6Z_RS13805 WP_395601047.1 3030255..3030725(+) (ssb) [Providencia rettgeri strain M-D3G1-2]
MAERGVNKSIILGNLGDDPNVRYSPNGTAFANFSVATSETWRDKNTGEKRERTDWHNIVIQGKLAEVAGQYLKKGSQVYI
EGKMRTRKYQGNDGQDKYITEVIVGIDGKMQMLGSGNQTEVQNPKPSTQGIQRPQHQPKTQQPETPLDFDDDMIPF
MAERGVNKSIILGNLGDDPNVRYSPNGTAFANFSVATSETWRDKNTGEKRERTDWHNIVIQGKLAEVAGQYLKKGSQVYI
EGKMRTRKYQGNDGQDKYITEVIVGIDGKMQMLGSGNQTEVQNPKPSTQGIQRPQHQPKTQQPETPLDFDDDMIPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1065397 ACHW6Z_RS13805 WP_395601047.1 3030255..3030725(+) (ssb) [Providencia rettgeri strain M-D3G1-2]
ATGGCAGAGAGAGGCGTCAATAAATCCATCATTCTAGGAAATTTAGGCGATGATCCGAACGTGAGGTATTCACCGAACGG
AACCGCATTTGCTAATTTCTCAGTTGCTACAAGTGAAACGTGGAGAGATAAAAATACAGGAGAGAAGCGAGAACGCACTG
ATTGGCATAATATTGTTATACAAGGAAAATTAGCTGAAGTAGCAGGCCAGTACCTGAAAAAAGGGAGTCAGGTATACATA
GAGGGAAAAATGCGTACTCGTAAGTATCAAGGTAATGACGGTCAGGATAAGTACATTACCGAGGTCATCGTTGGCATTGA
TGGAAAAATGCAAATGCTAGGCAGCGGTAATCAGACTGAAGTTCAGAACCCGAAGCCATCAACTCAGGGAATTCAGCGCC
CACAACACCAACCGAAAACTCAACAACCTGAGACACCATTAGATTTTGACGACGATATGATCCCGTTTTAG
ATGGCAGAGAGAGGCGTCAATAAATCCATCATTCTAGGAAATTTAGGCGATGATCCGAACGTGAGGTATTCACCGAACGG
AACCGCATTTGCTAATTTCTCAGTTGCTACAAGTGAAACGTGGAGAGATAAAAATACAGGAGAGAAGCGAGAACGCACTG
ATTGGCATAATATTGTTATACAAGGAAAATTAGCTGAAGTAGCAGGCCAGTACCTGAAAAAAGGGAGTCAGGTATACATA
GAGGGAAAAATGCGTACTCGTAAGTATCAAGGTAATGACGGTCAGGATAAGTACATTACCGAGGTCATCGTTGGCATTGA
TGGAAAAATGCAAATGCTAGGCAGCGGTAATCAGACTGAAGTTCAGAACCCGAAGCCATCAACTCAGGGAATTCAGCGCC
CACAACACCAACCGAAAACTCAACAACCTGAGACACCATTAGATTTTGACGACGATATGATCCCGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
54.144 |
100 |
0.628 |
| ssb | Glaesserella parasuis strain SC1401 |
48.066 |
100 |
0.558 |
| ssb | Neisseria meningitidis MC58 |
44.318 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
48.63 |
93.59 |
0.455 |