Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACHQF1_RS02215 Genome accession   NZ_CP172119
Coordinates   529208..529729 (+) Length   173 a.a.
NCBI ID   WP_349482537.1    Uniprot ID   -
Organism   Providencia rettgeri strain M-D1C2-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 524208..534729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHQF1_RS02205 - 524331..525527 (+) 1197 WP_115166560.1 amino acid aminotransferase -
  ACHQF1_RS02210 uvrA 525607..528441 (-) 2835 WP_109912590.1 excinuclease ABC subunit UvrA -
  ACHQF1_RS02215 ssb 529208..529729 (+) 522 WP_349482537.1 single-stranded DNA-binding protein Machinery gene
  ACHQF1_RS02220 - 530005..530412 (-) 408 WP_198642002.1 helix-turn-helix domain-containing protein -
  ACHQF1_RS02225 - 530652..531824 (-) 1173 WP_198642003.1 MFS transporter -
  ACHQF1_RS02230 ivbL 532158..532247 (+) 90 WP_109912586.1 ilvB operon leader peptide IvbL -
  ACHQF1_RS02235 ilvB 532351..534048 (+) 1698 WP_349482542.1 acetolactate synthase large subunit -
  ACHQF1_RS02240 ilvN 534051..534335 (+) 285 WP_004914949.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18589.66 Da        Isoelectric Point: 4.9468

>NTDB_id=1065348 ACHQF1_RS02215 WP_349482537.1 529208..529729(+) (ssb) [Providencia rettgeri strain M-D1C2-2]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAPSQGQGGQGGWGQPQQPQVAQQFSGGGAPAARPSAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1065348 ACHQF1_RS02215 WP_349482537.1 529208..529729(+) (ssb) [Providencia rettgeri strain M-D1C2-2]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGAGTCGTTATTTTCGGCAAACTTGCTGAGGTAGCAGGTGAATACCTAAAAAAAGGTTCACAAGTCTATATC
GAAGGTTCTCTGCAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGTTATACGACAGAAGTTGTTGTGAATATCGG
TGGCTCAATGCAAATGTTAGGTGGCCGTGGCGGTGATGCACCATCACAAGGTCAAGGCGGTCAAGGTGGTTGGGGCCAAC
CACAGCAGCCTCAAGTGGCACAACAATTCAGTGGTGGTGGAGCGCCAGCCGCACGCCCATCAGCACCTGCACCACAAACC
AATGAACCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.667

100

0.746
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.613
  ssb Neisseria meningitidis MC58

46.591

100

0.474
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.474

Multiple sequence alignment