Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACHWYH_RS06440 Genome accession   NZ_CP172084
Coordinates   1287037..1287834 (-) Length   265 a.a.
NCBI ID   WP_112103058.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA81666     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1282037..1292834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYH_RS06405 nfuA 1282067..1282663 (-) 597 WP_005652130.1 Fe-S biogenesis protein NfuA -
  ACHWYH_RS06410 - 1282739..1283425 (-) 687 WP_112103056.1 ComF family protein -
  ACHWYH_RS06415 tnpA 1283797..1284252 (-) 456 WP_005652127.1 IS200/IS605 family transposase -
  ACHWYH_RS06420 comE 1284249..1285592 (-) 1344 WP_032823983.1 type IV pilus secretin PilQ Machinery gene
  ACHWYH_RS06425 comD 1285602..1286015 (-) 414 WP_070828390.1 pilus assembly protein PilP Machinery gene
  ACHWYH_RS06430 comC 1286012..1286533 (-) 522 WP_112103057.1 competence protein ComC Machinery gene
  ACHWYH_RS06435 comB 1286530..1287036 (-) 507 WP_005656467.1 competence protein ComB Machinery gene
  ACHWYH_RS06440 comA 1287037..1287834 (-) 798 WP_112103058.1 pilus assembly protein PilM Machinery gene
  ACHWYH_RS06445 - 1287933..1290527 (+) 2595 WP_112103059.1 penicillin-binding protein 1A -
  ACHWYH_RS06450 - 1290600..1291445 (+) 846 WP_112103060.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  ACHWYH_RS06455 - 1291598..1291927 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  ACHWYH_RS06460 recR 1292057..1292659 (+) 603 WP_005626527.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31559.96 Da        Isoelectric Point: 6.2341

>NTDB_id=1065059 ACHWYH_RS06440 WP_112103058.1 1287037..1287834(-) (comA) [Haemophilus influenzae strain GA81666]
MQFSLKNYRTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFSLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSTAQTYLQDFQPFKINVLDVASNAILRA
FQYLLNEQVRSENTLFLFQEDDYCLVICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLLENWQRV
ETDLPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=1065059 ACHWYH_RS06440 WP_112103058.1 1287037..1287834(-) (comA) [Haemophilus influenzae strain GA81666]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAGCAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTTCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCACAAGAATGTCATCAACAATGTAAATTTGTGATTGAGAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTGTTGGATGTTGCGTCAAATGCTATTTTGCGTGCA
TTTCAGTATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGTGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGATTTACCCTTTATCGCGCTCGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

96.604

100

0.966
  comA Haemophilus influenzae 86-028NP

96.604

100

0.966

Multiple sequence alignment