Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACHKST_RS19650 Genome accession   NZ_CP172011
Coordinates   3957673..3958191 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain Bv.g1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3952673..3963191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHKST_RS19620 - 3953874..3954254 (-) 381 WP_071392547.1 VOC family protein -
  ACHKST_RS19625 - 3954310..3955248 (-) 939 WP_395429005.1 LacI family DNA-binding transcriptional regulator -
  ACHKST_RS19630 xth 3955311..3956069 (-) 759 WP_101562615.1 exodeoxyribonuclease III -
  ACHKST_RS19635 - 3956096..3956623 (-) 528 WP_101562616.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  ACHKST_RS19640 - 3956620..3957201 (-) 582 WP_101562617.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  ACHKST_RS19645 rpsR 3957390..3957629 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  ACHKST_RS19650 ssbA 3957673..3958191 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  ACHKST_RS19655 rpsF 3958231..3958518 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  ACHKST_RS19660 ychF 3958630..3959730 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  ACHKST_RS19665 - 3959857..3961860 (-) 2004 WP_101562618.1 molybdopterin-dependent oxidoreductase -
  ACHKST_RS19670 - 3961907..3962113 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1064872 ACHKST_RS19650 WP_004392979.1 3957673..3958191(-) (ssbA) [Bacillus velezensis strain Bv.g1]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1064872 ACHKST_RS19650 WP_004392979.1 3957673..3958191(-) (ssbA) [Bacillus velezensis strain Bv.g1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment