Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACHKST_RS17050 Genome accession   NZ_CP172011
Coordinates   3424148..3424837 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain Bv.g1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3419148..3429837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHKST_RS17015 - 3419346..3419828 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACHKST_RS17020 flgM 3419843..3420109 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACHKST_RS17025 - 3420179..3420598 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACHKST_RS17030 comFC 3420672..3421361 (-) 690 WP_199445943.1 phosphoribosyltransferase family protein Machinery gene
  ACHKST_RS17035 - 3421367..3421651 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  ACHKST_RS17040 comFA 3421709..3423094 (-) 1386 WP_101562487.1 DEAD/DEAH box helicase Machinery gene
  ACHKST_RS17045 - 3423202..3424050 (-) 849 WP_101562488.1 DegV family protein -
  ACHKST_RS17050 degU 3424148..3424837 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACHKST_RS17055 degS 3424914..3426077 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACHKST_RS17060 - 3426300..3426947 (+) 648 WP_060657503.1 YigZ family protein -
  ACHKST_RS17065 - 3426952..3428166 (+) 1215 WP_101562489.1 LCP family protein -
  ACHKST_RS17070 - 3428256..3429332 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1064863 ACHKST_RS17050 WP_003219701.1 3424148..3424837(-) (degU) [Bacillus velezensis strain Bv.g1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1064863 ACHKST_RS17050 WP_003219701.1 3424148..3424837(-) (degU) [Bacillus velezensis strain Bv.g1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment