Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACHKST_RS17030 Genome accession   NZ_CP172011
Coordinates   3420672..3421361 (-) Length   229 a.a.
NCBI ID   WP_199445943.1    Uniprot ID   -
Organism   Bacillus velezensis strain Bv.g1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3415672..3426361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHKST_RS16995 fliW 3415763..3416194 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  ACHKST_RS17000 - 3416224..3416793 (-) 570 WP_003151397.1 DUF6470 family protein -
  ACHKST_RS17005 flgL 3416884..3417801 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ACHKST_RS17010 flgK 3417813..3419330 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  ACHKST_RS17015 - 3419346..3419828 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACHKST_RS17020 flgM 3419843..3420109 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACHKST_RS17025 - 3420179..3420598 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACHKST_RS17030 comFC 3420672..3421361 (-) 690 WP_199445943.1 phosphoribosyltransferase family protein Machinery gene
  ACHKST_RS17035 - 3421367..3421651 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  ACHKST_RS17040 comFA 3421709..3423094 (-) 1386 WP_101562487.1 DEAD/DEAH box helicase Machinery gene
  ACHKST_RS17045 - 3423202..3424050 (-) 849 WP_101562488.1 DegV family protein -
  ACHKST_RS17050 degU 3424148..3424837 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACHKST_RS17055 degS 3424914..3426077 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25392.13 Da        Isoelectric Point: 8.2217

>NTDB_id=1064861 ACHKST_RS17030 WP_199445943.1 3420672..3421361(-) (comFC) [Bacillus velezensis strain Bv.g1]
MNCLLCDSPISGSLTWRSLFSLTPEQEVCSLCSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAVCFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1064861 ACHKST_RS17030 WP_199445943.1 3420672..3421361(-) (comFC) [Bacillus velezensis strain Bv.g1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAGGTTCATTGACTTGGAGATCTCTGTTTTCTCTGACGCCCGAGCAAGA
GGTATGCAGCTTATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGTTTGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(143-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment