Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACHKST_RS17040 Genome accession   NZ_CP172011
Coordinates   3421709..3423094 (-) Length   461 a.a.
NCBI ID   WP_101562487.1    Uniprot ID   -
Organism   Bacillus velezensis strain Bv.g1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3416709..3428094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHKST_RS17005 flgL 3416884..3417801 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ACHKST_RS17010 flgK 3417813..3419330 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  ACHKST_RS17015 - 3419346..3419828 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACHKST_RS17020 flgM 3419843..3420109 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACHKST_RS17025 - 3420179..3420598 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACHKST_RS17030 comFC 3420672..3421361 (-) 690 WP_199445943.1 phosphoribosyltransferase family protein Machinery gene
  ACHKST_RS17035 - 3421367..3421651 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  ACHKST_RS17040 comFA 3421709..3423094 (-) 1386 WP_101562487.1 DEAD/DEAH box helicase Machinery gene
  ACHKST_RS17045 - 3423202..3424050 (-) 849 WP_101562488.1 DegV family protein -
  ACHKST_RS17050 degU 3424148..3424837 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACHKST_RS17055 degS 3424914..3426077 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACHKST_RS17060 - 3426300..3426947 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52569.94 Da        Isoelectric Point: 10.0531

>NTDB_id=1064862 ACHKST_RS17040 WP_101562487.1 3421709..3423094(-) (comFA) [Bacillus velezensis strain Bv.g1]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQTT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGSSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DEILRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSLHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1064862 ACHKST_RS17040 WP_101562487.1 3421709..3423094(-) (comFA) [Bacillus velezensis strain Bv.g1]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAGAGGCAGACTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCAGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCATCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGATATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTTTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(329-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.174

99.783

0.62

Multiple sequence alignment