Detailed information
Bioinformatically predicted
Overview
| Name | comW | Type | Regulator |
| Locus tag | AABA16_RS00115 | Genome accession | NZ_AP028610 |
| Coordinates | 21600..21836 (+) | Length | 78 a.a. |
| NCBI ID | WP_000939545.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain Sep5 | ||
| Function | stabilization and activation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 16600..26836
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABA16_RS00105 | - | 20294..20503 (+) | 210 | Protein_14 | transposase | - |
| AABA16_RS00110 | - | 20538..21335 (-) | 798 | Protein_15 | transposase | - |
| AABA16_RS00115 (TKY124516_00150) | comW | 21600..21836 (+) | 237 | WP_000939545.1 | sigma(X)-activator ComW | Regulator |
| AABA16_RS00120 (TKY124516_00160) | - | 22067..23353 (+) | 1287 | WP_000205044.1 | adenylosuccinate synthase | - |
| AABA16_RS00125 (TKY124516_00170) | tadA | 23554..24021 (+) | 468 | WP_000291875.1 | tRNA adenosine(34) deaminase TadA | - |
| AABA16_RS00135 (TKY124516_00180) | - | 24208..24651 (+) | 444 | WP_000701992.1 | dUTP diphosphatase | - |
| AABA16_RS00140 (TKY124516_00190) | - | 24653..25168 (+) | 516 | WP_000691236.1 | histidine phosphatase family protein | - |
| AABA16_RS00145 (TKY124516_00200) | radA | 25182..26543 (+) | 1362 | WP_074017595.1 | DNA repair protein RadA | Machinery gene |
Sequence
Protein
Download Length: 78 a.a. Molecular weight: 9658.13 Da Isoelectric Point: 6.7051
>NTDB_id=106485 AABA16_RS00115 WP_000939545.1 21600..21836(+) (comW) [Streptococcus pneumoniae strain Sep5]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRKDFIVYHYRVAYRLYLEKLVMNRGFISC
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRKDFIVYHYRVAYRLYLEKLVMNRGFISC
Nucleotide
Download Length: 237 bp
>NTDB_id=106485 AABA16_RS00115 WP_000939545.1 21600..21836(+) (comW) [Streptococcus pneumoniae strain Sep5]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAAGGATTTTA
TTGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAAGGATTTTA
TTGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comW | Streptococcus pneumoniae Rx1 |
100 |
100 |
1 |
| comW | Streptococcus pneumoniae D39 |
100 |
100 |
1 |
| comW | Streptococcus pneumoniae R6 |
100 |
100 |
1 |
| comW | Streptococcus pneumoniae TIGR4 |
100 |
100 |
1 |
| comW | Streptococcus mitis SK321 |
75.641 |
100 |
0.756 |
| comW | Streptococcus mitis NCTC 12261 |
75.325 |
98.718 |
0.744 |