Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | EG66_RS06290 | Genome accession | NZ_CP007605 |
| Coordinates | 1284633..1285643 (+) | Length | 336 a.a. |
| NCBI ID | WP_000664530.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BM012B | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1279633..1290643
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG66_RS06265 (EG66_06605) | - | 1279809..1281131 (-) | 1323 | WP_023592439.1 | M23 family metallopeptidase | - |
| EG66_RS06270 (EG66_06610) | - | 1281141..1282085 (-) | 945 | WP_023592440.1 | outer membrane beta-barrel protein | - |
| EG66_RS06275 (EG66_06615) | - | 1282094..1282963 (-) | 870 | WP_023592441.1 | outer membrane beta-barrel protein | - |
| EG66_RS06280 (EG66_06620) | - | 1282953..1283675 (-) | 723 | WP_023592442.1 | hypothetical protein | - |
| EG66_RS06285 (EG66_06625) | panB | 1283824..1284636 (+) | 813 | WP_023592443.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| EG66_RS06290 (EG66_06630) | ruvB | 1284633..1285643 (+) | 1011 | WP_000664530.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| EG66_RS06295 (EG66_06635) | tatB | 1285711..1286193 (+) | 483 | WP_023592444.1 | Sec-independent protein translocase protein TatB | - |
| EG66_RS06300 (EG66_06640) | tatC | 1286186..1286968 (+) | 783 | WP_038420148.1 | twin-arginine translocase subunit TatC | - |
| EG66_RS06305 (EG66_06645) | queA | 1286972..1288009 (+) | 1038 | WP_023592446.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| EG66_RS06310 (EG66_06650) | rsmG | 1288006..1288542 (+) | 537 | WP_001068845.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| EG66_RS06315 (EG66_06655) | - | 1288536..1288766 (+) | 231 | WP_000944428.1 | PP0621 family protein | - |
| EG66_RS06320 (EG66_06660) | - | 1288769..1289176 (+) | 408 | WP_038420151.1 | hypothetical protein | - |
| EG66_RS06330 (EG66_06670) | - | 1289308..1289880 (-) | 573 | WP_001879972.1 | outer membrane protein | - |
| EG66_RS06335 (EG66_06675) | - | 1290201..1290575 (+) | 375 | WP_000772151.1 | chemotaxis response regulator CheY | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37306.32 Da Isoelectric Point: 6.0715
>NTDB_id=106482 EG66_RS06290 WP_000664530.1 1284633..1285643(+) (ruvB) [Helicobacter pylori strain BM012B]
MKERIVNLETLDFETSQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=106482 EG66_RS06290 WP_000664530.1 1284633..1285643(+) (ruvB) [Helicobacter pylori strain BM012B]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAGTCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGACGAAATCCACCGGCTCAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGTTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCCCTTATCATCAAAAAAGCCGCCATTAAACTCAACCAAGACATCAAAGAAGAAAGTGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTCGTTAAAAATTCAAGCTTGATG
GATTTGAACATCACTTTGCATGCCTTGAATGAATTAGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAGTCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGACGAAATCCACCGGCTCAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGTTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCCCTTATCATCAAAAAAGCCGCCATTAAACTCAACCAAGACATCAAAGAAGAAAGTGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTCGTTAAAAATTCAAGCTTGATG
GATTTGAACATCACTTTGCATGCCTTGAATGAATTAGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
98.214 |
100 |
0.982 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |