Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACHMXA_RS05840 Genome accession   NZ_CP171978
Coordinates   1216701..1217246 (+) Length   181 a.a.
NCBI ID   WP_395319252.1    Uniprot ID   -
Organism   Variovorax sp. UC74_104     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1211701..1222246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMXA_RS05830 (ACHMXA_05830) uvrA 1212025..1215182 (-) 3158 Protein_1152 excinuclease ABC subunit UvrA -
  ACHMXA_RS05835 (ACHMXA_05835) - 1215201..1216592 (-) 1392 WP_395319250.1 chloride channel protein -
  ACHMXA_RS05840 (ACHMXA_05840) ssb 1216701..1217246 (+) 546 WP_395319252.1 single-stranded DNA-binding protein Machinery gene
  ACHMXA_RS05845 (ACHMXA_05845) pcaD 1217319..1218155 (-) 837 WP_395319254.1 3-oxoadipate enol-lactonase -
  ACHMXA_RS05850 (ACHMXA_05850) - 1218259..1219236 (+) 978 WP_395319256.1 LysR family transcriptional regulator -
  ACHMXA_RS05855 (ACHMXA_05855) - 1219292..1219942 (+) 651 WP_395319258.1 hypothetical protein -
  ACHMXA_RS05860 (ACHMXA_05860) - 1219949..1220920 (-) 972 WP_176665869.1 LysR family transcriptional regulator -
  ACHMXA_RS05865 (ACHMXA_05865) - 1221016..1221558 (+) 543 WP_395319260.1 GAF domain-containing protein -
  ACHMXA_RS05870 (ACHMXA_05870) - 1221549..1221965 (+) 417 WP_176665871.1 VOC family protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19111.02 Da        Isoelectric Point: 5.9505

>NTDB_id=1064712 ACHMXA_RS05840 WP_395319252.1 1216701..1217246(+) (ssb) [Variovorax sp. UC74_104]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGPSDDDGYGGGGGGGYSQGGGGGGGGYAPRAPAAAPRAPAPA
PRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1064712 ACHMXA_RS05840 WP_395319252.1 1216701..1217246(+) (ssb) [Variovorax sp. UC74_104]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAATCTGGGGCGCGACCCCGAGATGCGTACATTCCCGAGCGGCGACCA
GGTCGCGAACGTCACAGTGGCCACCACCGATCGCTGGAAGGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAGTGGC
ACCGCATCGTCTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAGGGA
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAGTACACCACCGAGATCCGCGCAGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGCCAGGGCGGCCCGTCGGGCCCGAGCGATGACGACGGCTACGGCGGCGGTGGCGGCGGCGGTT
ACTCGCAAGGCGGCGGCGGCGGTGGTGGCGGCTACGCCCCGCGCGCACCTGCTGCTGCACCGCGCGCTCCGGCGCCGGCT
CCGCGCCAAGCACCGGCCAAGTCGTCGTCGGGCTTCGACGATATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.579

100

0.541
  ssb Vibrio cholerae strain A1552

47.917

100

0.508
  ssb Neisseria gonorrhoeae MS11

46.369

98.895

0.459
  ssb Neisseria meningitidis MC58

45.251

98.895

0.448

Multiple sequence alignment