Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   ACHFJ9_RS14100 Genome accession   NZ_CP171887
Coordinates   1310503..1311090 (+) Length   195 a.a.
NCBI ID   WP_048626254.1    Uniprot ID   -
Organism   Vibrio sp. D3     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1305503..1316090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS14080 (ACHFJ9_14080) panP 1305590..1307236 (-) 1647 WP_006742621.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  ACHFJ9_RS14085 (ACHFJ9_14085) - 1307436..1307948 (-) 513 WP_012841922.1 hypothetical protein -
  ACHFJ9_RS14090 (ACHFJ9_14090) - 1308155..1309060 (-) 906 WP_006742620.1 lysine exporter LysO family protein -
  ACHFJ9_RS14095 (ACHFJ9_14095) - 1309213..1310133 (-) 921 WP_005393212.1 HDOD domain-containing protein -
  ACHFJ9_RS14100 (ACHFJ9_14100) tfoX 1310503..1311090 (+) 588 WP_048626254.1 TfoX/Sxy family DNA transformation protein Regulator
  ACHFJ9_RS14105 (ACHFJ9_14105) - 1311281..1311829 (-) 549 WP_395357193.1 hypothetical protein -
  ACHFJ9_RS14110 (ACHFJ9_14110) - 1312119..1312616 (-) 498 WP_012841921.1 response regulator -
  ACHFJ9_RS14115 (ACHFJ9_14115) - 1312613..1314553 (-) 1941 WP_395357195.1 ATP-binding protein -
  ACHFJ9_RS14120 (ACHFJ9_14120) - 1314740..1316008 (+) 1269 WP_395357197.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22452.75 Da        Isoelectric Point: 8.0901

>NTDB_id=1064644 ACHFJ9_RS14100 WP_048626254.1 1310503..1311090(+) (tfoX) [Vibrio sp. D3]
MDMTDQAFFKYVRNFSEYQKRSMFGGIGLFTDDAMFSLVSNDCCYLRGGNGLDEVFTQLNCEKYKHVKKQTTATVNYYDV
TDLFESGYAGLDELVQKSIEYSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGVDDVETFLELGPVKVFNKVKVAYGN
DVDVKLLWKFAGATDGVHWKLIQEPRKKQLLALCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1064644 ACHFJ9_RS14100 WP_048626254.1 1310503..1311090(+) (tfoX) [Vibrio sp. D3]
ATGGACATGACAGACCAAGCTTTTTTTAAATATGTACGCAACTTTAGTGAGTATCAAAAACGTTCTATGTTCGGTGGTAT
CGGTTTATTCACCGATGATGCTATGTTTTCGCTTGTCAGCAATGATTGCTGCTACTTACGTGGTGGTAATGGATTGGACG
AAGTGTTTACTCAACTGAATTGCGAAAAATATAAGCACGTCAAAAAACAGACGACGGCAACCGTAAATTATTATGATGTA
ACAGATTTGTTTGAATCCGGATATGCAGGACTCGATGAACTGGTACAAAAATCAATTGAATACTCAATTAAGGAACGAAA
ATATCAAAAGTCTTCTGCCAGTAGACGTTTGAGAGATCTGCCAAATATGCAGTTAACTCTTGAGCGAATGGTCAAGAAAG
CAGGTGTTGATGACGTAGAAACCTTTTTAGAACTTGGACCTGTAAAAGTCTTCAACAAAGTTAAAGTGGCTTATGGCAAT
GACGTTGATGTTAAGTTGCTTTGGAAATTCGCTGGTGCCACTGACGGTGTTCATTGGAAACTGATTCAAGAGCCGCGTAA
AAAGCAGTTATTGGCGCTGTGTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-100)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.282

100

0.913
  tfoX Vibrio campbellii strain DS40M4

89.744

100

0.897
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

66.321

98.974

0.656
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

66.321

98.974

0.656
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

66.321

98.974

0.656
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

66.321

98.974

0.656
  tfoX Vibrio cholerae strain A1552

66.321

98.974

0.656
  tfoX Aliivibrio fischeri ES114

60.733

97.949

0.595

Multiple sequence alignment