Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACHD8M_RS20400 Genome accession   NZ_CP171807
Coordinates   4047086..4047604 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain BRI3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4042086..4052604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHD8M_RS20370 - 4043287..4043667 (-) 381 WP_159353683.1 VOC family protein -
  ACHD8M_RS20375 - 4043723..4044661 (-) 939 Protein_3954 LacI family DNA-binding transcriptional regulator -
  ACHD8M_RS20380 xth 4044724..4045482 (-) 759 WP_159353684.1 exodeoxyribonuclease III -
  ACHD8M_RS20385 - 4045509..4046036 (-) 528 WP_159353685.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  ACHD8M_RS20390 - 4046033..4046614 (-) 582 WP_156735304.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  ACHD8M_RS20395 rpsR 4046803..4047042 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  ACHD8M_RS20400 ssbA 4047086..4047604 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  ACHD8M_RS20405 rpsF 4047644..4047931 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  ACHD8M_RS20410 ychF 4048043..4049143 (-) 1101 WP_159353686.1 redox-regulated ATPase YchF -
  ACHD8M_RS20415 - 4049270..4051273 (-) 2004 WP_159353687.1 molybdopterin-dependent oxidoreductase -
  ACHD8M_RS20420 - 4051320..4051526 (-) 207 WP_012118942.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1064376 ACHD8M_RS20400 WP_004392979.1 4047086..4047604(-) (ssbA) [Bacillus velezensis strain BRI3]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1064376 ACHD8M_RS20400 WP_004392979.1 4047086..4047604(-) (ssbA) [Bacillus velezensis strain BRI3]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment