Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   AABA07_RS10230 Genome accession   NZ_AP028608
Coordinates   2004276..2004938 (-) Length   220 a.a.
NCBI ID   WP_000649971.1    Uniprot ID   A0A0B7MFB3
Organism   Streptococcus pneumoniae strain Sep3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1999276..2009938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA07_RS10205 (TKY120829_19830) - 1999426..1999692 (-) 267 WP_001278167.1 Veg family protein -
  AABA07_RS10210 (TKY120829_19840) dnaB 1999694..2001046 (-) 1353 WP_000852486.1 replicative DNA helicase -
  AABA07_RS10215 (TKY120829_19850) rplI 2001090..2001542 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  AABA07_RS10220 (TKY120829_19860) - 2001539..2003512 (-) 1974 WP_000715128.1 DHH family phosphoesterase -
  AABA07_RS10225 (TKY120829_19870) raiA 2003648..2004196 (-) 549 WP_000599107.1 ribosome-associated translation inhibitor RaiA -
  AABA07_RS10230 (TKY120829_19880) comFC/cflB 2004276..2004938 (-) 663 WP_000649971.1 ComF family protein Machinery gene
  AABA07_RS10235 (TKY120829_19890) comFA/cflA 2004935..2006233 (-) 1299 WP_000867610.1 DEAD/DEAH box helicase Machinery gene
  AABA07_RS10240 (TKY120829_19900) - 2006289..2006924 (+) 636 WP_000395739.1 YigZ family protein -
  AABA07_RS10245 (TKY120829_19910) cysK 2007209..2008129 (+) 921 WP_000029862.1 cysteine synthase A -
  AABA07_RS10250 - 2008368..2008733 (-) 366 Protein_1979 IS66 family transposase -
  AABA07_RS10255 - 2008715..2009001 (+) 287 Protein_1980 transposase -
  AABA07_RS10260 (TKY120829_19930) tnpB 2009156..2009410 (-) 255 WP_078373100.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25241.10 Da        Isoelectric Point: 7.3688

>NTDB_id=106398 AABA07_RS10230 WP_000649971.1 2004276..2004938(-) (comFC/cflB) [Streptococcus pneumoniae strain Sep3]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=106398 AABA07_RS10230 WP_000649971.1 2004276..2004938(-) (comFC/cflB) [Streptococcus pneumoniae strain Sep3]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAAGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAACAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTAGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCCGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7MFB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

100

100

1
  comFC/cflB Streptococcus pneumoniae Rx1

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae D39

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae R6

99.545

100

0.995
  comFC/cflB Streptococcus mitis NCTC 12261

91.818

100

0.918
  comFC/cflB Streptococcus mitis SK321

91.364

100

0.914

Multiple sequence alignment