Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   ACG3JH_RS07025 Genome accession   NZ_CP171731
Coordinates   1381375..1382430 (-) Length   351 a.a.
NCBI ID   WP_013794421.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1376375..1387430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JH_RS06980 (ACG3JH_06980) - 1376561..1376752 (-) 192 WP_003108723.1 hypothetical protein -
  ACG3JH_RS06985 (ACG3JH_06985) - 1376827..1377009 (-) 183 WP_003108726.1 hypothetical protein -
  ACG3JH_RS06990 (ACG3JH_06990) - 1377046..1377249 (-) 204 WP_003108729.1 helix-turn-helix domain-containing protein -
  ACG3JH_RS06995 (ACG3JH_06995) - 1377518..1378207 (+) 690 WP_013794418.1 LexA family transcriptional regulator -
  ACG3JH_RS07000 (ACG3JH_07000) - 1378221..1378394 (+) 174 WP_192813189.1 hypothetical protein -
  ACG3JH_RS07005 (ACG3JH_07005) - 1378396..1378986 (+) 591 WP_013794419.1 hypothetical protein -
  ACG3JH_RS07010 (ACG3JH_07010) - 1379012..1379419 (+) 408 WP_041828634.1 hypothetical protein -
  ACG3JH_RS07015 (ACG3JH_07015) - 1379424..1379741 (+) 318 WP_041828635.1 hypothetical protein -
  ACG3JH_RS07020 (ACG3JH_07020) - 1379862..1381298 (+) 1437 WP_003108747.1 recombinase family protein -
  ACG3JH_RS07025 (ACG3JH_07025) comYB 1381375..1382430 (-) 1056 WP_013794421.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACG3JH_RS07030 (ACG3JH_07030) comYA 1382342..1383283 (-) 942 WP_003108751.1 competence type IV pilus ATPase ComGA Machinery gene
  ACG3JH_RS07035 (ACG3JH_07035) - 1383338..1383712 (-) 375 WP_003103833.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40401.47 Da        Isoelectric Point: 9.8708

>NTDB_id=1063736 ACG3JH_RS07025 WP_013794421.1 1381375..1382430(-) (comYB) [Streptococcus parauberis strain DB-M1]
MKNGIKLLISWLQKDISLKKKGKKKRLSSKKQYQLIQLLHNLQASGFNLVEMVSFLKKSKLISEEQVKIMEFHMLNGSSL
SKIMLDLGYPDSIITQLSLAELHGNILGSLENIETYLLQVNHIKKKTFEVVMYPLVLLFFLTTILLGLRQYLLPSLNEEG
PLMFLLTYFPHLLIILIVIILFVSIVVIYKWRHSSPLKLISQISRLPLIGYVIQLYMTAFYAREWGNLLDQGLELSTILS
VMSKEKSLLVREIGIEMNSAFVEGIPFEKKVLDYPFFKNELSLIISYGQVKSKLGKELEIYSQNTWESYFRFLIQLTQLI
QPIVFLAVALIIVMIYAAMLLPIYQNMGGNL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=1063736 ACG3JH_RS07025 WP_013794421.1 1381375..1382430(-) (comYB) [Streptococcus parauberis strain DB-M1]
ATGAAAAATGGAATCAAGCTATTGATCAGTTGGTTGCAAAAGGACATTTCCCTGAAGAAAAAGGGGAAAAAGAAAAGATT
ATCGAGTAAAAAACAATATCAACTTATCCAATTGTTACATAATCTCCAAGCAAGCGGATTTAATTTAGTTGAAATGGTAT
CTTTTCTGAAGAAAAGTAAATTAATATCTGAAGAGCAGGTTAAAATTATGGAATTTCACATGCTCAATGGCAGTAGTTTA
TCAAAAATCATGCTTGATTTAGGTTACCCAGATAGTATTATAACTCAATTGAGTTTAGCAGAATTACATGGGAATATTTT
GGGGAGTCTTGAAAATATAGAAACATACCTTTTGCAAGTGAATCATATTAAAAAGAAAACTTTCGAAGTGGTAATGTATC
CACTTGTATTACTATTTTTTCTAACAACTATACTACTTGGTTTGAGACAATATTTATTGCCTTCGCTTAATGAGGAAGGT
CCACTTATGTTCCTACTAACCTATTTTCCTCACCTTTTAATAATCCTAATTGTGATAATCCTCTTTGTCTCTATAGTAGT
TATTTATAAATGGCGACACAGTTCACCACTCAAGCTAATTAGCCAAATTAGTCGATTGCCTTTAATAGGATACGTCATCC
AGCTATATATGACAGCCTTCTATGCTCGAGAATGGGGAAATTTATTAGATCAGGGGCTTGAATTAAGTACGATTTTGTCT
GTTATGAGTAAGGAAAAATCACTTTTGGTACGGGAAATAGGTATAGAAATGAATAGTGCTTTTGTAGAGGGGATTCCGTT
TGAGAAAAAGGTACTAGATTATCCATTTTTTAAAAATGAATTGAGTTTAATTATTTCATATGGACAAGTTAAATCAAAAT
TAGGGAAGGAGTTAGAAATATATTCTCAAAATACATGGGAGTCTTACTTCAGGTTCCTCATACAACTTACTCAGCTGATT
CAACCAATTGTATTTTTAGCAGTTGCTCTAATTATTGTCATGATTTATGCAGCAATGCTATTGCCAATTTATCAAAATAT
GGGAGGAAATTTATGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(36-154)

Type II secretion system (T2SS), protein F (T2SSF)

(222-342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

51.014

98.291

0.501
  comYB Streptococcus mutans UA159

51.014

98.291

0.501
  comYB Streptococcus gordonii str. Challis substr. CH1

46.765

96.866

0.453
  comGB/cglB Streptococcus mitis NCTC 12261

46.176

96.866

0.447
  comGB/cglB Streptococcus mitis SK321

44.807

96.011

0.43
  comGB/cglB Streptococcus pneumoniae Rx1

44.51

96.011

0.427
  comGB/cglB Streptococcus pneumoniae D39

44.51

96.011

0.427
  comGB/cglB Streptococcus pneumoniae R6

44.51

96.011

0.427
  comGB/cglB Streptococcus pneumoniae TIGR4

44.51

96.011

0.427
  comGB Lactococcus lactis subsp. cremoris KW2

41.935

97.151

0.407

Multiple sequence alignment