Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACG3JH_RS05575 Genome accession   NZ_CP171731
Coordinates   1108964..1110943 (-) Length   659 a.a.
NCBI ID   WP_013794304.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M1     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1103964..1115943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JH_RS05555 (ACG3JH_05555) amiF 1104444..1105388 (-) 945 WP_003104982.1 ATP-binding cassette domain-containing protein Regulator
  ACG3JH_RS05560 (ACG3JH_05560) - 1105381..1106462 (-) 1082 Protein_1087 ABC transporter ATP-binding protein -
  ACG3JH_RS05565 (ACG3JH_05565) amiD 1106471..1107397 (-) 927 WP_041828589.1 oligopeptide ABC transporter permease OppC Regulator
  ACG3JH_RS05570 (ACG3JH_05570) amiC 1107397..1108896 (-) 1500 WP_013794303.1 ABC transporter permease Regulator
  ACG3JH_RS05575 (ACG3JH_05575) amiA3 1108964..1110943 (-) 1980 WP_013794304.1 peptide ABC transporter substrate-binding protein Regulator
  ACG3JH_RS05580 (ACG3JH_05580) pbp3 1111275..1112513 (+) 1239 WP_013794305.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ACG3JH_RS05585 (ACG3JH_05585) pbp3 1112637..1113857 (+) 1221 WP_003108558.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ACG3JH_RS05590 (ACG3JH_05590) - 1113934..1115128 (+) 1195 Protein_1093 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73294.50 Da        Isoelectric Point: 5.2041

>NTDB_id=1063728 ACG3JH_RS05575 WP_013794304.1 1108964..1110943(-) (amiA3) [Streptococcus parauberis strain DB-M1]
MKNGKWLAAAGIAVLSVSALTACGNGSSKDSKSKTYSYVYTTDPDTLDYLVSGRSTTSEITQNGVDGLMEYDNEGNLVPS
VAKSWTVSKDGLTYTYKIRKDSKWYTADGEEYAKVTAEDFVTGMKHAADSNSDALYLVQDSIKGLSDYIDGKTKDFSTVG
VKAVDKNTVQYTLKQPESFWNSKLTYGILSPVNADFLKSQGKDFGKASDASSILYNGPFLISALTSKSSIEFTKNENYWD
KEDVHLDAVQLTYYDGQDQESLFRNFDKGAYSAARLFPTTPSYKTAKKKYGENITYAPQKSNIYYATFNLNRTAYDHTKK
TDDKQKEDTRKAVLNKDFRQALTFGFNRKSYTAQSAGEEAASKSLRNLLIPPAFVQIKGEDFGKTVEKDLATYGDQWKDV
SLADAQDGLYNKDKAKAQMDKAKEALEAEGVQFPIHIDMPQDQTATVNMQQAQSMKQSMEDSLGKENVVIDIIELNADTY
NNVTYMAETPTQQDWDISTASGWSSDYLDPSSYLDIFNPSLANAQTKFIGLEPIKDNTIASEAGLDEFSKLANEASKITD
DKDARYEKYAKAQAALADSAVYIPTYSLGGTPAVTKVVPFSAAFGWAGNKSDNTYFKYVQLQDKPVTAKQFNKAMKDWKK
SKEKSNKKYEESLEKHIEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1063728 ACG3JH_RS05575 WP_013794304.1 1108964..1110943(-) (amiA3) [Streptococcus parauberis strain DB-M1]
ATGAAAAATGGGAAATGGTTAGCGGCAGCGGGGATTGCTGTTTTGTCAGTTTCAGCTTTGACTGCCTGTGGTAATGGTTC
AAGTAAAGATAGCAAAAGTAAAACCTATAGCTATGTTTATACAACTGATCCTGATACCTTGGATTACTTAGTTTCAGGGC
GTTCAACAACCAGTGAAATCACCCAAAATGGTGTTGATGGCTTGATGGAATATGACAACGAAGGGAATTTGGTTCCTTCT
GTAGCTAAAAGCTGGACAGTATCAAAAGACGGTTTAACTTATACCTATAAAATACGTAAAGATTCAAAATGGTATACAGC
TGATGGTGAAGAATACGCTAAGGTAACAGCGGAAGACTTTGTGACTGGCATGAAACATGCTGCAGATAGCAATTCTGATG
CCCTTTACCTAGTTCAAGATTCAATTAAAGGTTTAAGTGATTATATCGATGGGAAAACAAAAGATTTCTCAACTGTTGGT
GTTAAAGCCGTTGACAAAAACACAGTTCAATATACATTGAAACAACCAGAAAGTTTCTGGAATTCTAAATTAACTTATGG
TATCTTATCTCCAGTTAATGCAGATTTTCTAAAATCACAAGGTAAAGATTTTGGTAAAGCATCTGATGCTTCATCGATTC
TTTATAACGGGCCATTCCTTATCTCCGCATTAACAAGTAAATCATCAATTGAATTTACAAAAAATGAAAACTATTGGGAT
AAAGAAGATGTTCACTTAGATGCTGTTCAATTAACTTACTATGATGGACAAGATCAAGAGTCTCTATTTAGAAACTTTGA
TAAAGGTGCTTATTCGGCTGCACGTTTATTCCCAACAACTCCATCTTACAAGACAGCTAAGAAAAAATATGGCGAAAACA
TCACTTATGCACCTCAAAAATCAAATATTTATTATGCAACATTTAATTTAAACCGTACGGCTTATGACCATACTAAAAAG
ACAGACGATAAACAAAAAGAGGATACTCGTAAAGCAGTTCTAAATAAAGATTTCCGTCAAGCTTTAACATTTGGTTTTAA
CCGTAAATCCTATACAGCTCAATCAGCTGGTGAAGAAGCAGCAAGCAAATCACTTCGTAATTTGCTAATTCCACCAGCAT
TTGTTCAAATTAAGGGTGAAGACTTTGGCAAGACTGTTGAAAAAGATTTAGCGACATATGGAGATCAATGGAAAGATGTT
AGCCTAGCTGATGCCCAAGATGGTCTTTACAATAAAGACAAAGCTAAGGCTCAAATGGATAAAGCTAAAGAAGCCTTGGA
AGCTGAAGGTGTTCAATTCCCAATTCACATTGATATGCCTCAAGATCAGACTGCTACCGTAAATATGCAACAAGCCCAAT
CCATGAAGCAATCAATGGAAGACTCACTTGGTAAAGAAAATGTTGTAATTGACATTATTGAGCTCAATGCTGATACCTAT
AACAATGTTACTTATATGGCAGAAACACCAACTCAACAAGATTGGGATATTTCTACAGCTTCTGGATGGAGTTCTGACTA
CTTAGACCCAAGCTCATATCTTGATATCTTTAATCCAAGCTTGGCTAATGCACAAACTAAATTTATTGGACTTGAACCAA
TTAAAGATAATACTATAGCATCTGAAGCTGGTTTAGATGAATTTAGTAAATTAGCAAATGAAGCAAGTAAGATTACTGAT
GACAAGGATGCTCGTTATGAAAAATATGCAAAAGCGCAAGCTGCTCTTGCGGATTCAGCAGTCTACATTCCAACATACTC
ACTTGGAGGAACGCCTGCAGTAACAAAAGTTGTTCCATTCTCAGCTGCATTTGGTTGGGCAGGTAACAAATCAGATAATA
CATATTTCAAATATGTACAATTACAAGATAAACCTGTAACGGCTAAACAATTCAACAAAGCAATGAAGGATTGGAAAAAG
TCAAAAGAAAAATCAAATAAAAAATATGAAGAGTCATTAGAAAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

52.727

100

0.528
  amiA Streptococcus salivarius strain HSISS4

52.504

100

0.525
  amiA3 Streptococcus thermophilus LMD-9

52.273

100

0.524

Multiple sequence alignment