Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACG4I4_RS12255 | Genome accession | NZ_CP171676 |
| Coordinates | 2692672..2693205 (-) | Length | 177 a.a. |
| NCBI ID | WP_000168289.1 | Uniprot ID | Q9KUW2 |
| Organism | Vibrio cholerae strain CRC1106 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2687672..2698205
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACG4I4_RS12235 | - | 2688127..2688444 (-) | 318 | WP_000252812.1 | MSHA biogenesis protein MshK | - |
| ACG4I4_RS12240 | gspM | 2688437..2689087 (-) | 651 | WP_000835144.1 | type II secretion system protein GspM | - |
| ACG4I4_RS12245 | - | 2689084..2690523 (-) | 1440 | WP_000743253.1 | PilN domain-containing protein | - |
| ACG4I4_RS12250 | csrD | 2690536..2692548 (-) | 2013 | WP_001918202.1 | RNase E specificity factor CsrD | - |
| ACG4I4_RS12255 | ssb | 2692672..2693205 (-) | 534 | WP_000168289.1 | single-stranded DNA-binding protein | Machinery gene |
| ACG4I4_RS12260 | qstR | 2693497..2694141 (+) | 645 | WP_001188316.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| ACG4I4_RS12265 | galU | 2694314..2695186 (+) | 873 | WP_001920788.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| ACG4I4_RS12270 | uvrA | 2695342..2698164 (+) | 2823 | WP_000357696.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19672.90 Da Isoelectric Point: 5.7626
>NTDB_id=1063031 ACG4I4_RS12255 WP_000168289.1 2692672..2693205(-) (ssb) [Vibrio cholerae strain CRC1106]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=1063031 ACG4I4_RS12255 WP_000168289.1 2692672..2693205(-) (ssb) [Vibrio cholerae strain CRC1106]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGTTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGTTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| ssb | Glaesserella parasuis strain SC1401 |
50.265 |
100 |
0.537 |
| ssb | Neisseria meningitidis MC58 |
47.778 |
100 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
47.778 |
100 |
0.486 |