Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACGHX3_RS15950 Genome accession   NZ_CP171632
Coordinates   3405995..3407053 (-) Length   352 a.a.
NCBI ID   WP_162336766.1    Uniprot ID   -
Organism   Pseudoxanthomonas japonensis strain LY0623     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3400995..3412053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHX3_RS15930 (ACGHX3_15930) - 3402087..3404006 (-) 1920 WP_213604515.1 type IV pilus secretin PilQ -
  ACGHX3_RS15935 (ACGHX3_15935) - 3404021..3404545 (-) 525 WP_162336769.1 pilus assembly protein PilP -
  ACGHX3_RS15940 (ACGHX3_15940) - 3404545..3405234 (-) 690 WP_162336768.1 type 4a pilus biogenesis protein PilO -
  ACGHX3_RS15945 (ACGHX3_15945) - 3405231..3405995 (-) 765 WP_162336767.1 PilN domain-containing protein -
  ACGHX3_RS15950 (ACGHX3_15950) pilM 3405995..3407053 (-) 1059 WP_162336766.1 pilus assembly protein PilM Machinery gene
  ACGHX3_RS15955 (ACGHX3_15955) - 3407270..3409693 (+) 2424 WP_213604514.1 penicillin-binding protein 1A -
  ACGHX3_RS15960 (ACGHX3_15960) - 3409798..3410454 (+) 657 WP_213604513.1 hypothetical protein -
  ACGHX3_RS15965 (ACGHX3_15965) - 3410551..3411840 (-) 1290 WP_162336763.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37896.58 Da        Isoelectric Point: 4.4422

>NTDB_id=1062422 ACGHX3_RS15950 WP_162336766.1 3405995..3407053(-) (pilM) [Pseudoxanthomonas japonensis strain LY0623]
MGLIPKSQSPLIGVDISSTAVKLLQLSRVGNRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVNRAGSKAKHAAAA
VAGSAVITKIIPMPADLDESDLEAQVELEAVNYIPYPIEEVNIDFEVLGPMPNNPEMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALMATDLPIPQDGVVALVDIGATMTTLNVLRRGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEIEVLEPFKEATVQQISRLLQFFYAGSEFNRVDQIVLAGGCAALPGLPEMVEEQLGVPTVVANPLA
QMTLGPRVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1062422 ACGHX3_RS15950 WP_162336766.1 3405995..3407053(-) (pilM) [Pseudoxanthomonas japonensis strain LY0623]
GTGGGGCTAATCCCAAAAAGCCAGTCGCCGCTGATCGGCGTCGACATCAGTTCGACTGCGGTGAAACTGCTGCAGCTGTC
GCGCGTGGGCAACCGTTACCGGGTTGAGCACTACGCTGTCGAGCCGCTGCCGCCGAATGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAGGCCGTCGGCGAGGCCATCCGCCGCGCGGTTAACCGCGCCGGCAGCAAGGCCAAGCATGCCGCTGCCGCC
GTGGCCGGCTCGGCGGTGATCACCAAGATCATCCCGATGCCTGCGGACCTGGACGAGAGCGACCTGGAAGCCCAGGTGGA
GCTCGAGGCGGTCAACTACATCCCGTATCCCATCGAGGAAGTGAACATCGACTTCGAGGTGCTGGGCCCCATGCCCAACA
ACCCGGAGATGGTGCAGGTACTCCTTGCTGCCTCGCGCTCCGAGAACGTGGAGCTGCGCCAGTCCGCGCTTGAACTCGGC
GGGCTGACCGCCAAGGTCATGGACGTGGAAGCCTTCGCGGTGGAGAACGCCTTCGCCCTGATGGCCACCGACCTGCCGAT
CCCGCAGGACGGCGTGGTGGCCCTGGTCGACATCGGCGCCACCATGACCACGCTCAACGTCCTGCGCCGGGGCCGCAGCC
TGTACAGCCGCGAACAGGTCTTCGGCGGCAAGCAGCTCACCGACGAGGTGATGCGGCGCTACGGCCTGACCTATGAGGAA
GCCGGACTGGCCAAGCGCCAGGGCGGCCTGCCGGAAAGCTACGAGATCGAAGTACTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAGTTCAACCGCGTCGACCAGATCGTGCTCGCCGGTG
GCTGCGCCGCGTTGCCCGGCCTGCCAGAGATGGTGGAAGAACAGCTCGGCGTGCCGACTGTGGTCGCCAATCCCCTGGCG
CAGATGACCCTCGGACCCCGCGTGCAGGCGCACGCGCTGGCCCAGGACGCTCCCGCGCTGATGATCGCCACCGGCCTGGC
TTTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.705

100

0.517
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  comM Acinetobacter baylyi ADP1

50.857

99.432

0.506
  pilM Legionella pneumophila strain ERS1305867

46.154

99.716

0.46

Multiple sequence alignment