Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACGB44_RS18155 Genome accession   NZ_CP171478
Coordinates   3847935..3849272 (+) Length   445 a.a.
NCBI ID   WP_152481770.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain RL-XB02     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3842935..3854272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGB44_RS18130 (ACGB44_18130) pgeF 3842967..3843704 (-) 738 WP_394374994.1 peptidoglycan editing factor PgeF -
  ACGB44_RS18135 (ACGB44_18135) rluD 3843701..3844675 (-) 975 WP_063541901.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACGB44_RS18140 (ACGB44_18140) - 3844879..3845868 (+) 990 WP_063541899.1 outer membrane protein assembly factor BamD -
  ACGB44_RS18145 (ACGB44_18145) - 3845989..3846222 (+) 234 WP_110775887.1 PP0621 family protein -
  ACGB44_RS18150 (ACGB44_18150) pilS 3846212..3847807 (+) 1596 WP_063541895.1 PAS domain-containing sensor histidine kinase Regulator
  ACGB44_RS18155 (ACGB44_18155) pilR 3847935..3849272 (+) 1338 WP_152481770.1 sigma-54 dependent transcriptional regulator Regulator
  ACGB44_RS18160 (ACGB44_18160) - 3849351..3850406 (-) 1056 WP_063541891.1 DUF2333 family protein -
  ACGB44_RS18165 (ACGB44_18165) - 3850621..3852216 (+) 1596 WP_102838687.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49568.95 Da        Isoelectric Point: 6.2057

>NTDB_id=1061406 ACGB44_RS18155 WP_152481770.1 3847935..3849272(+) (pilR) [Stutzerimonas frequens strain RL-XB02]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGSGLDLVQYIQQQHPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVSTALRLRAPAAESPVDNRLLGSSPPMKVLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSDKPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLADAM
LRRLAQECGDSSARLHPDALAKLENYRFPGNVRELENMLERAYTLCEDDEIKAGDLRLADSPGLSENGEASLAQIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1061406 ACGB44_RS18155 WP_152481770.1 3847935..3849272(+) (pilR) [Stutzerimonas frequens strain RL-XB02]
ATGACCGCGCGCCAGAAAGCATTGATCATCGATGACGAGCCCGATATCCGCGAGTTGCTGGAGATCACCCTAGGGCGCAT
GAAGCTCGATACCCGCAGCGCCCGCAACCTCAAGGAAGCGCGCGAGTGCCTGGCACGCGAGCACTATGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAGCGGCTTGGATCTGGTGCAGTACATCCAGCAGCAGCATCCACAACTGCCGGTGGCG
ATGATCACCGCCTATGGCAGTCTCGACACCGCCATCGGCGCCCTGAAGGCCGGCGCTTTCGATTTTCTGACCAAGCCTGT
GGATCTCAACCGCCTTCGCGAACTCGTCAGCACCGCCTTGCGGCTGCGCGCACCGGCGGCCGAATCGCCAGTGGACAATC
GCCTGCTCGGTAGTTCGCCGCCGATGAAGGTCCTGCGCAAGCAGATCGGCAAGCTCGCCCGCAGCCAGGCACCGGTCTAT
ATCAGCGGCGAATCGGGCAGCGGCAAGGAACTGGTGGCCCGCCTGATCCACGAACAGGGCCCACGCAGCGACAAGCCCTT
CGTGCCGGTCAACTGCGGCGCGATCCCTTCGGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCAGTG
GCGCCATCGAGGACAAGCCCGGACTGTTCCAGGCGGCCAATGGCGGCACGCTGTTCCTCGACGAAGTGGCGGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGGCCGTACGCGCGGTCGGCGGTGCGCAGGAAGTGATGGT
CGACGTCCGCATCCTCTGTGCCACCCACAAGGATCTGGCCAGCGAAGTGGCCGCAGGCCGCTTCCGCCAGGACCTGTATT
ACCGTCTGAACGTCATCGAACTGCGTGTGCCGCCACTACGCGAGCGCCGTGAAGACATCGGCCTGCTCGCCGATGCCATG
CTGCGCCGGTTGGCACAGGAATGCGGCGACAGCAGTGCCCGGCTGCATCCTGATGCCCTGGCGAAACTGGAAAACTATCG
TTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGGGCCTACACGCTCTGCGAAGACGACGAGATCAAGGCCG
GCGACCTGCGTCTAGCCGACAGCCCGGGCCTGTCGGAGAACGGCGAAGCCAGTCTGGCGCAGATCGATAACCTGGAAGAC
CACCTGGAAGAGATCGAGCGCAAGCTGATCATGCAGGCCCTTGAGGAAACCCGATGGAACCGCACCGCGGCGGCCCAGCG
GCTTGGTCTGACCTTCCGCTCGATGCGCTACCGGCTGAAAAAGCTCGGCCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

86.261

99.775

0.861
  pilR Acinetobacter baumannii strain A118

50.327

100

0.519
  luxO Vibrio cholerae strain A1552

38.479

100

0.387

Multiple sequence alignment