Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACGB44_RS18150 Genome accession   NZ_CP171478
Coordinates   3846212..3847807 (+) Length   531 a.a.
NCBI ID   WP_063541895.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain RL-XB02     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3841212..3852807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGB44_RS18130 (ACGB44_18130) pgeF 3842967..3843704 (-) 738 WP_394374994.1 peptidoglycan editing factor PgeF -
  ACGB44_RS18135 (ACGB44_18135) rluD 3843701..3844675 (-) 975 WP_063541901.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACGB44_RS18140 (ACGB44_18140) - 3844879..3845868 (+) 990 WP_063541899.1 outer membrane protein assembly factor BamD -
  ACGB44_RS18145 (ACGB44_18145) - 3845989..3846222 (+) 234 WP_110775887.1 PP0621 family protein -
  ACGB44_RS18150 (ACGB44_18150) pilS 3846212..3847807 (+) 1596 WP_063541895.1 PAS domain-containing sensor histidine kinase Regulator
  ACGB44_RS18155 (ACGB44_18155) pilR 3847935..3849272 (+) 1338 WP_152481770.1 sigma-54 dependent transcriptional regulator Regulator
  ACGB44_RS18160 (ACGB44_18160) - 3849351..3850406 (-) 1056 WP_063541891.1 DUF2333 family protein -
  ACGB44_RS18165 (ACGB44_18165) - 3850621..3852216 (+) 1596 WP_102838687.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58881.93 Da        Isoelectric Point: 8.1622

>NTDB_id=1061405 ACGB44_RS18150 WP_063541895.1 3846212..3847807(+) (pilS) [Stutzerimonas frequens strain RL-XB02]
MGTENLAFLGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIVVAVLVQNPARDLPVL
GLALMDVILLSGLFYFGGGTPSGIGNLLIIAVAIANILLRGRIGFFVAAVAAIGLIYLTFYLSISRPEASSQYVQAAALG
TLCFAAAFLVQGLTRRLQASENLARQRAEDVANLEALNALILQRMRTGIMVLGPQERVLLANQGALQLLGQDESLTGERL
APRCPELLKALQQWRGNPTLRPQNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAH
EIRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRQGLTP
QQTVHVETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQHSQAQVWLRLFRDEQSDLPIVEVLDDGPGIAADQLHNVFE
PFFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=1061405 ACGB44_RS18150 WP_063541895.1 3846212..3847807(+) (pilS) [Stutzerimonas frequens strain RL-XB02]
GTGGGCACTGAAAACCTCGCTTTTCTCGGCGATCAAGGGCGACGCATCCTCCGCCTGTATCACCTCTATCGCCTGACCAT
CGGCCTGGCACTGGTACTGCTGATAAGCAGTGACCTGCACAACGACCTGCTGCAGATGAGCAATCCGCAGCTGTTCCAGT
ACGGTGCCTGGCTCTATCTGATCCTGAACATCGTGGTCGCCGTGCTGGTGCAGAACCCTGCGCGTGACCTGCCTGTACTC
GGCCTGGCACTGATGGACGTGATCCTGCTGTCCGGCCTGTTCTATTTCGGTGGAGGCACGCCGAGTGGAATCGGCAACCT
GCTGATCATTGCCGTCGCCATCGCCAACATCCTGCTGCGCGGGCGCATCGGGTTCTTCGTTGCCGCCGTGGCAGCGATCG
GCCTGATCTACCTGACCTTCTATCTCAGCATCAGCCGGCCTGAAGCCAGCAGCCAGTATGTCCAGGCCGCCGCGCTCGGC
ACCCTCTGTTTCGCTGCCGCGTTTCTCGTACAAGGCCTCACGCGGCGCCTGCAGGCGAGCGAAAACCTCGCACGCCAGCG
CGCCGAAGACGTCGCCAACCTCGAAGCACTCAACGCGCTTATCCTGCAGCGCATGCGCACCGGCATCATGGTGCTGGGCC
CCCAGGAACGCGTGCTGCTGGCCAACCAGGGCGCGCTGCAGCTACTCGGCCAGGACGAGTCGCTGACCGGCGAGCGTCTC
GCTCCGCGCTGCCCGGAGCTGCTCAAAGCCCTGCAACAATGGCGCGGCAATCCCACCCTGCGCCCGCAGAATCTCAAGGC
AACGCCGGGTGGCCCGACGCTCCAGCCGAGCTTCGCCGCCCTGCAACATGGCAACAAGCTCGACACCCTGGTCTTTCTCG
AGGACATCTCGCAGATCGCGCAGAAAGCGCAGCAGCTCAAGCTCGCATCTCTCGGACGACTCACCGCCAGCATTGCCCAC
GAGATACGCAACCCGCTGGGCGCCATCAGCCATGCCGCACAGCTGCTTCAGGAGTCCGAGGAGCTGGACGGCCCGGACCG
CCGCCTGGCGCAGATCATTCAGGACCACTCTCGACGCATGAACCTGGTCATCGAGAACGTCCTGCAGCTTTCGCGGCGCC
GACAGGCCGAGCCACAGTTGCTGGACCTCAAGTACTGGCTGCATCGCTTCGCGAGCGAGTTCCGCCAAGGCCTGACCCCA
CAACAGACGGTGCATGTGGAAACGATCGGCAGTTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACCCAGGTGCTGAC
CAACCTGGTGCAGAACGGCCTGCGCTACAGTGGACAGCAGCATTCGCAGGCGCAGGTCTGGCTGCGACTTTTCCGCGACG
AGCAGAGCGATCTGCCGATCGTCGAGGTGCTTGATGACGGTCCCGGCATTGCTGCCGACCAACTGCACAACGTGTTCGAG
CCGTTCTTCACCACCGAGAGCAAGGGCACCGGCCTGGGGCTTTACATCTCGCGAGAACTTTGCGAAAGCAATCAGGCTCG
ACTGGATTATCGCGAACGGCCCGAAGGCGGTAGCTGCTTCCGCATCGTCTTCGCCCACCCGCGTAAGCTGAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(310-374)

PAS domain (PAS_8)

(202-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.725

100

0.657

Multiple sequence alignment