Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACGB44_RS04150 Genome accession   NZ_CP171478
Coordinates   898358..898849 (+) Length   163 a.a.
NCBI ID   WP_394375469.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain RL-XB02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 893358..903849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGB44_RS04140 (ACGB44_04140) uvrA 893859..896696 (-) 2838 WP_102840422.1 excinuclease ABC subunit UvrA -
  ACGB44_RS04145 (ACGB44_04145) - 896828..898195 (+) 1368 WP_394375468.1 MFS transporter -
  ACGB44_RS04150 (ACGB44_04150) ssb 898358..898849 (+) 492 WP_394375469.1 single-stranded DNA-binding protein Machinery gene
  ACGB44_RS04155 (ACGB44_04155) - 898861..899745 (+) 885 WP_063544075.1 sugar nucleotide-binding protein -
  ACGB44_RS04160 (ACGB44_04160) - 899738..900667 (+) 930 WP_394375470.1 NAD-dependent epimerase/dehydratase family protein -
  ACGB44_RS04165 (ACGB44_04165) - 900738..901424 (-) 687 WP_014595784.1 OmpW family protein -
  ACGB44_RS04170 (ACGB44_04170) - 901609..902394 (+) 786 WP_013981723.1 DUF3450 domain-containing protein -
  ACGB44_RS04175 (ACGB44_04175) - 902391..903737 (+) 1347 WP_394375471.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18313.34 Da        Isoelectric Point: 5.9492

>NTDB_id=1061388 ACGB44_RS04150 WP_394375469.1 898358..898849(+) (ssb) [Stutzerimonas frequens strain RL-XB02]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTIQLLGGRGGNSDDAPRQPRPQREPQQASRQQAQPQQPAARQQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1061388 ACGB44_RS04150 WP_394375469.1 898358..898849(+) (ssb) [Stutzerimonas frequens strain RL-XB02]
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAAGACAAGCAGACCGGTCAGCTGCAAGAGCGTACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAAATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGTCGCCTGCAGACGCGCGAGTGGGAGAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGCAC
CATACAGCTGCTCGGCGGCCGTGGTGGCAATTCCGACGATGCGCCACGCCAGCCGCGCCCGCAGCGCGAGCCGCAGCAGG
CCTCGCGTCAGCAGGCCCAGCCGCAGCAGCCTGCTGCCCGGCAGCAGCCCGCGCCGGACTATGACAGCTTCGACGACGAC
ATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56

100

0.601
  ssb Neisseria gonorrhoeae MS11

48.588

100

0.528
  ssb Neisseria meningitidis MC58

47.159

100

0.509
  ssb Glaesserella parasuis strain SC1401

45.856

100

0.509

Multiple sequence alignment