Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACGI6K_RS18585 Genome accession   NZ_CP171449
Coordinates   3851186..3851689 (-) Length   167 a.a.
NCBI ID   WP_376945751.1    Uniprot ID   -
Organism   Azorhizophilus paspali strain ATCC 23833     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3846186..3856689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGI6K_RS18560 (ACGI6K_18560) - 3847691..3848629 (-) 939 WP_376945745.1 NAD-dependent epimerase/dehydratase family protein -
  ACGI6K_RS18565 (ACGI6K_18565) - 3848622..3849506 (-) 885 WP_376945747.1 sugar nucleotide-binding protein -
  ACGI6K_RS18570 (ACGI6K_18570) - 3849975..3850106 (-) 132 WP_376945874.1 hypothetical protein -
  ACGI6K_RS18575 (ACGI6K_18575) - 3850237..3850534 (-) 298 Protein_3645 SDR family oxidoreductase -
  ACGI6K_RS18580 (ACGI6K_18580) - 3850496..3851170 (+) 675 WP_376945749.1 LysR substrate-binding domain-containing protein -
  ACGI6K_RS18585 (ACGI6K_18585) ssb 3851186..3851689 (-) 504 WP_376945751.1 single-stranded DNA-binding protein Machinery gene
  ACGI6K_RS18590 (ACGI6K_18590) - 3851699..3853087 (-) 1389 WP_376945753.1 MFS transporter -
  ACGI6K_RS18595 (ACGI6K_18595) uvrA 3853220..3856054 (+) 2835 WP_376945755.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18685.66 Da        Isoelectric Point: 5.2852

>NTDB_id=1061261 ACGI6K_RS18585 WP_376945751.1 3851186..3851689(-) (ssb) [Azorhizophilus paspali strain ATCC 23833]
MARGVNKVILIGNVGGDPETRYLPNGNAVTNITLATTDSWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQCYVE
GRLQTRKWQGQDGQDRYTTEIVVDMNGTLQLLGGRAGNPDDAPRVPRPPREPQQQAQAPQSRPAPAPQQDRQPPAPDYDS
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1061261 ACGI6K_RS18585 WP_376945751.1 3851186..3851689(-) (ssb) [Azorhizophilus paspali strain ATCC 23833]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGATCGGCAACGTCGGCGGTGATCCGGAAACCCGGTACCTGCCCAACGGCAA
CGCGGTCACCAACATCACCCTGGCCACTACCGACAGTTGGAAGGACAAGCAGACCGGCCAACAGCAGGAGCGTACCGAAT
GGCATCGCGTGGTGTTCTTCGGCCGGCTCGCCGAGATCGCTGGCGAGTACCTGCGCAAGGGCTCGCAGTGCTACGTCGAG
GGTCGCCTGCAAACCCGCAAGTGGCAGGGGCAGGATGGCCAGGATCGCTACACCACCGAGATCGTCGTCGACATGAACGG
CACCTTGCAACTGCTCGGCGGTCGCGCCGGTAACCCCGACGACGCACCGCGCGTGCCGCGTCCCCCGCGCGAGCCGCAGC
AGCAGGCCCAGGCTCCGCAGTCGCGCCCCGCTCCCGCTCCGCAGCAGGACCGGCAGCCGCCGGCGCCGGACTACGACAGC
TTCGACGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.091

100

0.623
  ssb Glaesserella parasuis strain SC1401

47.826

100

0.527
  ssb Neisseria meningitidis MC58

44.886

100

0.473
  ssb Neisseria gonorrhoeae MS11

44.886

100

0.473

Multiple sequence alignment