Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilX   Type   Machinery gene
Locus tag   ACGTHP_RS08710 Genome accession   NZ_CP171396
Coordinates   1883718..1884536 (+) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain T14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1878718..1889536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTHP_RS08675 (ACGTHP_08675) - 1879300..1879430 (-) 131 Protein_1709 hypothetical protein -
  ACGTHP_RS08680 (ACGTHP_08680) rpoZ 1879469..1879747 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACGTHP_RS08685 (ACGTHP_08685) gmk 1879820..1880449 (-) 630 WP_000015937.1 guanylate kinase -
  ACGTHP_RS08690 (ACGTHP_08690) ispH 1880572..1881522 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACGTHP_RS08695 (ACGTHP_08695) fimU 1881692..1882165 (+) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACGTHP_RS08700 (ACGTHP_08700) pilV 1882159..1882719 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACGTHP_RS08705 (ACGTHP_08705) pilW 1882720..1883721 (+) 1002 WP_023896140.1 PilW family protein Machinery gene
  ACGTHP_RS08710 (ACGTHP_08710) pilX 1883718..1884536 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACGTHP_RS08715 (ACGTHP_08715) pilY1 1884548..1888402 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  ACGTHP_RS08720 (ACGTHP_08720) pilY2 1888415..1888897 (+) 483 WP_001046413.1 type IV pilin protein Machinery gene
  ACGTHP_RS08725 (ACGTHP_08725) pilE 1888894..1889319 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene

Sequence


Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=1061092 ACGTHP_RS08710 WP_000149377.1 1883718..1884536(+) (pilX) [Acinetobacter baumannii strain T14]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1061092 ACGTHP_RS08710 WP_000149377.1 1883718..1884536(+) (pilX) [Acinetobacter baumannii strain T14]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTAGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989


Multiple sequence alignment