Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   ACGTHP_RS08705 Genome accession   NZ_CP171396
Coordinates   1882720..1883721 (+) Length   333 a.a.
NCBI ID   WP_023896140.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain T14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1877720..1888721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTHP_RS08675 (ACGTHP_08675) - 1879300..1879430 (-) 131 Protein_1709 hypothetical protein -
  ACGTHP_RS08680 (ACGTHP_08680) rpoZ 1879469..1879747 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACGTHP_RS08685 (ACGTHP_08685) gmk 1879820..1880449 (-) 630 WP_000015937.1 guanylate kinase -
  ACGTHP_RS08690 (ACGTHP_08690) ispH 1880572..1881522 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACGTHP_RS08695 (ACGTHP_08695) fimU 1881692..1882165 (+) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACGTHP_RS08700 (ACGTHP_08700) pilV 1882159..1882719 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACGTHP_RS08705 (ACGTHP_08705) pilW 1882720..1883721 (+) 1002 WP_023896140.1 PilW family protein Machinery gene
  ACGTHP_RS08710 (ACGTHP_08710) pilX 1883718..1884536 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACGTHP_RS08715 (ACGTHP_08715) pilY1 1884548..1888402 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35818.47 Da        Isoelectric Point: 6.1010

>NTDB_id=1061091 ACGTHP_RS08705 WP_023896140.1 1882720..1883721(+) (pilW) [Acinetobacter baumannii strain T14]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTANNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGTKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRNRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1061091 ACGTHP_RS08705 WP_023896140.1 1882720..1883721(+) (pilW) [Acinetobacter baumannii strain T14]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGCGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTACGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCTGATAACAGAAATCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.099

100

0.991

Multiple sequence alignment