Detailed information NTG1060919

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACGTJS_RS07360
• Genome accession: NZ_CP171363
• Coordinates: 1502300..1503211 (+)
• Length: 303 a.a.
• NCBI ID: WP_315040991.1
• Uniprot ID: -
• Organism: Faucicola mancuniensis strain GVCNT2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1497300..1508211

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGTJS_RS07340 (ACGTJS_07340)	-	1497579..1497872 (-)	294	WP_315044197.1	DUF1778 domain-containing protein	-
ACGTJS_RS07345 (ACGTJS_07345)	tilS	1497946..1499175 (+)	1230	WP_410471605.1	tRNA lysidine(34) synthetase TilS	-
ACGTJS_RS07350 (ACGTJS_07350)	pilB	1499318..1501021 (+)	1704	WP_410471606.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACGTJS_RS07355 (ACGTJS_07355)	pilC	1501077..1502300 (+)	1224	WP_315040990.1	type II secretion system F family protein	Machinery gene
ACGTJS_RS07360 (ACGTJS_07360)	pilD	1502300..1503211 (+)	912	WP_315040991.1	A24 family peptidase	Machinery gene
ACGTJS_RS07365 (ACGTJS_07365)	coaE	1503250..1503867 (+)	618	WP_315040992.1	dephospho-CoA kinase	-
ACGTJS_RS07385 (ACGTJS_07385)	tpiA	1504403..1505209 (+)	807	WP_315040993.1	triose-phosphate isomerase	-
ACGTJS_RS07390 (ACGTJS_07390)	secG	1505240..1505545 (+)	306	WP_315040994.1	preprotein translocase subunit SecG	-
ACGTJS_RS07400 (ACGTJS_07400)	-	1505832..1506842 (-)	1011	WP_315040997.1	polyprenyl synthetase family protein	-
ACGTJS_RS07405 (ACGTJS_07405)	rplU	1507068..1507379 (+)	312	WP_315040999.1	50S ribosomal protein L21	-
ACGTJS_RS07410 (ACGTJS_07410)	rpmA	1507405..1507665 (+)	261	WP_315041001.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 33316.80 Da
• Isoelectric Point: 8.4786

>NTDB_id=1060919 ACGTJS_RS07360 WP_315040991.1 1502300..1503211(+) (pilD) [Faucicola mancuniensis strain GVCNT2]
MTILLELINAIQQLPLTVMVVAGILGLCVGSFLNVVIYRTPAIMKKEWRLETAHFWQEQPDLADNHKQALLDTIKNDTPL
TLSFPPSRCPKCAHQIRWYENIPVLSWLALRGKCSGCQNPISMRYPLVELTTALSSVLVVYTLGANIQGMLGVLFTWILV
ALTGIDFDEQLLPDRLVYPLGMIGLLANAFGIFTSPVSAIFGAVFGFFVLWSVATAFMFLMKKQGMGHGDFKLLAALGAW
LGVGMLPLIIMLSCLIGSIVGGALMIKNKGSQQFAFGPYIAIAGFVALLWGTKINHWYLSSFM

Nucleotide

• Length: 912 bp

>NTDB_id=1060919 ACGTJS_RS07360 WP_315040991.1 1502300..1503211(+) (pilD) [Faucicola mancuniensis strain GVCNT2]
ATGACAATATTATTAGAGCTTATCAATGCGATACAACAATTACCCTTGACTGTGATGGTCGTTGCAGGTATTTTAGGATT
GTGCGTTGGCAGTTTTTTAAATGTGGTGATTTATCGCACACCTGCCATCATGAAAAAAGAATGGCGATTAGAAACCGCTC
ATTTTTGGCAGGAACAGCCTGATTTGGCAGACAATCATAAGCAAGCTTTGTTAGATACCATCAAAAATGACACCCCTTTA
ACTTTATCTTTTCCGCCGTCTCGTTGTCCAAAATGTGCCCATCAAATCCGTTGGTACGAAAATATTCCTGTGTTAAGCTG
GTTGGCTTTACGTGGTAAATGTAGCGGTTGCCAAAATCCTATCAGTATGCGTTATCCTTTGGTTGAACTGACGACAGCTT
TGTCATCGGTTTTGGTGGTTTATACTTTAGGGGCAAATATACAAGGTATGCTTGGCGTACTTTTTACTTGGATTTTGGTC
GCTTTGACAGGGATTGATTTTGATGAGCAATTATTGCCTGACCGTTTGGTCTATCCTTTGGGCATGATAGGGCTTTTGGC
AAATGCTTTTGGTATTTTTACATCGCCTGTTTCAGCTATTTTTGGTGCGGTTTTTGGCTTTTTTGTGCTTTGGTCGGTTG
CGACGGCCTTTATGTTTTTGATGAAAAAACAAGGCATGGGGCATGGTGATTTTAAATTACTTGCGGCATTGGGTGCATGG
CTGGGGGTAGGTATGTTACCACTTATCATTATGTTATCCTGTTTGATTGGCTCTATCGTTGGCGGTGCTTTAATGATAAA
AAATAAAGGCAGTCAGCAGTTTGCTTTTGGTCCTTATATTGCTATTGCTGGCTTTGTTGCTTTGCTTTGGGGTACAAAAA
TTAACCATTGGTATTTGTCAAGTTTTATGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (154-261)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (24-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	53.287	95.38	0.508
pilD	Acinetobacter baumannii D1279779	52.941	95.38	0.505
pilD	Vibrio campbellii strain DS40M4	47.508	99.34	0.472
pilD	Vibrio cholerae strain A1552	46.939	97.03	0.455
pilD	Neisseria gonorrhoeae MS11	42.857	87.789	0.376