Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACGTJS_RS05860 Genome accession   NZ_CP171363
Coordinates   1186259..1187311 (+) Length   350 a.a.
NCBI ID   WP_410473107.1    Uniprot ID   -
Organism   Faucicola mancuniensis strain GVCNT2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1181259..1192311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTJS_RS05850 (ACGTJS_05850) - 1182770..1183294 (+) 525 WP_410473105.1 DUF6586 family protein -
  ACGTJS_RS05855 (ACGTJS_05855) - 1183347..1186058 (-) 2712 WP_410473106.1 penicillin-binding protein 1A -
  ACGTJS_RS05860 (ACGTJS_05860) comM 1186259..1187311 (+) 1053 WP_410473107.1 pilus assembly protein PilM Machinery gene
  ACGTJS_RS05865 (ACGTJS_05865) - 1187311..1188135 (+) 825 WP_410473108.1 PilN domain-containing protein -
  ACGTJS_RS05870 (ACGTJS_05870) - 1188139..1188891 (+) 753 WP_410473109.1 type 4a pilus biogenesis protein PilO -
  ACGTJS_RS05875 (ACGTJS_05875) - 1188878..1189405 (+) 528 WP_410473110.1 pilus assembly protein PilP -
  ACGTJS_RS05880 (ACGTJS_05880) pilQ 1189430..1191592 (+) 2163 WP_410473111.1 type IV pilus secretin PilQ -
  ACGTJS_RS05885 (ACGTJS_05885) - 1191697..1192290 (+) 594 WP_315042229.1 shikimate kinase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38333.50 Da        Isoelectric Point: 4.5371

>NTDB_id=1060916 ACGTJS_RS05860 WP_410473107.1 1186259..1187311(+) (comM) [Faucicola mancuniensis strain GVCNT2]
MRFLTKSNKQIIGVDVTSTSVKMVEIVRQQGLFHLKNYGIEPLNRGAVIDKEIKDPEAVGDAINKLSRSLSLSSKNVATA
VSGASVISKIIEMDTAMSDTDREARIRLDADQYIPYPLTEVNLDFEVLGPAADEGKSRVLLVASRSENVEQRVEVMTLAG
LETKVVDVESYAIERAFQLIVDSLPGQPQNVALIDIGHSQTTLYIAKDGDFVYSREQLFGGGQLTESIQNRYGLTYEEAM
TNKKNMTLPDDYQSDVLMPFLDSIVQQITRSLQFYFSSSQSHQVDYILLSGGTASLPGLASMVEQKLGSRTSIANPFANM
TIGNQVNTESLLVDAPSLMAACGLALRSFD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1060916 ACGTJS_RS05860 WP_410473107.1 1186259..1187311(+) (comM) [Faucicola mancuniensis strain GVCNT2]
GTGAGGTTCTTAACAAAAAGCAACAAACAAATTATCGGTGTTGATGTTACTTCAACATCGGTAAAAATGGTTGAAATTGT
CCGCCAGCAAGGACTATTTCACCTAAAAAATTATGGTATTGAACCGCTCAATCGGGGTGCTGTGATTGATAAAGAAATCA
AAGACCCAGAAGCGGTAGGCGATGCGATTAATAAACTTAGTCGCTCGTTGAGTTTGTCTAGCAAAAACGTGGCAACAGCC
GTTTCGGGTGCATCTGTGATTAGCAAAATCATTGAGATGGATACTGCCATGTCAGATACTGACCGTGAGGCTCGTATTCG
TCTGGATGCTGACCAATATATTCCATATCCTTTAACCGAAGTTAATTTGGATTTTGAAGTATTAGGGCCTGCAGCTGATG
AAGGCAAATCTCGTGTGCTGTTAGTCGCATCACGCTCTGAAAATGTGGAGCAACGTGTTGAAGTGATGACGCTTGCAGGA
CTTGAGACAAAAGTGGTTGATGTGGAGTCTTATGCTATTGAGCGTGCATTTCAGCTCATCGTGGACAGCCTGCCAGGACA
ACCACAGAATGTCGCCTTGATTGACATTGGTCATAGTCAAACGACTTTGTATATCGCCAAAGATGGTGATTTTGTTTATA
GTCGCGAACAATTGTTTGGCGGTGGACAGCTCACAGAAAGTATCCAAAATCGTTATGGCTTAACTTATGAAGAAGCCATG
ACAAACAAGAAAAACATGACATTACCAGATGATTATCAATCAGATGTGTTAATGCCATTTTTGGATTCAATTGTTCAACA
AATCACCCGTTCGTTACAATTTTATTTTTCTTCAAGCCAAAGTCATCAGGTTGATTATATCTTGTTATCGGGTGGTACAG
CAAGTTTGCCCGGCTTGGCAAGCATGGTTGAACAAAAATTGGGTAGTCGTACCAGCATTGCCAATCCATTTGCCAATATG
ACGATTGGTAATCAAGTCAATACTGAGTCATTGTTGGTTGATGCACCTAGCTTGATGGCAGCGTGTGGTTTGGCATTAAG
GAGTTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

52.422

100

0.526
  pilM Acinetobacter baumannii D1279779

52.137

100

0.523
  comM Acinetobacter baylyi ADP1

49.435

100

0.5
  pilM Legionella pneumophila strain ERS1305867

45.042

100

0.454

Multiple sequence alignment