Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACGK9W_RS20710 Genome accession   NZ_CP171359
Coordinates   4428474..4428998 (+) Length   174 a.a.
NCBI ID   WP_008174919.1    Uniprot ID   G6YW08
Organism   Marinobacter flavimaris strain ZYH30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4423474..4433998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGK9W_RS20700 (ACGK9W_20700) uvrA 4424038..4426860 (-) 2823 WP_273085072.1 excinuclease ABC subunit UvrA -
  ACGK9W_RS20705 (ACGK9W_20705) - 4427046..4428416 (+) 1371 WP_053114306.1 MFS transporter -
  ACGK9W_RS20710 (ACGK9W_20710) ssb 4428474..4428998 (+) 525 WP_008174919.1 single-stranded DNA-binding protein Machinery gene
  ACGK9W_RS20715 (ACGK9W_20715) - 4429814..4431499 (+) 1686 WP_405418486.1 reverse transcriptase domain-containing protein -
  ACGK9W_RS20720 (ACGK9W_20720) - 4431804..4432736 (+) 933 WP_227499687.1 hypothetical protein -
  ACGK9W_RS20725 (ACGK9W_20725) - 4432733..4433338 (+) 606 WP_405418488.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18985.02 Da        Isoelectric Point: 4.9464

>NTDB_id=1060878 ACGK9W_RS20710 WP_008174919.1 4428474..4428998(+) (ssb) [Marinobacter flavimaris strain ZYH30]
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQLVPKTEWHRVVMFGKIAEVAGQYLRKGSKVYIE
GKLQTRKWQNKEGQDVYTTEVVVDINGQMQMLDSRGGEGGMSQGAPAGRPQQSGYNAPAGQQNNPPPQSGGYSNQPSQGS
MPEPVDDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1060878 ACGK9W_RS20710 WP_008174919.1 4428474..4428998(+) (ssb) [Marinobacter flavimaris strain ZYH30]
ATGGCACGAGGCGTAAACAAGGTAATCCTAATCGGTAATCTGGGGCAGGACCCGGATACCCGCTACACCCCCAACGGCAA
TGCCGTAGTAAACCTGAACCTTGCAACAGACGAAAGCTACAAGGATCGTCAGACCGGTCAGCTGGTGCCGAAAACTGAAT
GGCACCGGGTTGTCATGTTCGGCAAGATCGCCGAAGTTGCGGGACAGTACCTGCGAAAGGGCTCAAAGGTTTATATTGAG
GGCAAGCTTCAGACCCGCAAATGGCAGAACAAGGAAGGGCAGGATGTCTATACCACCGAGGTTGTGGTGGATATCAATGG
CCAGATGCAGATGCTGGACAGCCGTGGCGGCGAAGGCGGAATGAGCCAGGGTGCGCCGGCAGGACGGCCTCAGCAGTCCG
GCTACAACGCGCCGGCTGGACAGCAGAACAATCCGCCACCGCAATCCGGTGGCTACAGCAACCAGCCTTCGCAGGGCAGC
ATGCCCGAACCGGTTGACGACTTTGATGATGACATTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G6YW08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.598
  ssb Glaesserella parasuis strain SC1401

53.804

100

0.569
  ssb Neisseria gonorrhoeae MS11

44.693

100

0.46
  ssb Neisseria meningitidis MC58

44.134

100

0.454

Multiple sequence alignment