Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACF3M1_RS04860 Genome accession   NZ_CP171131
Coordinates   1064490..1065008 (+) Length   172 a.a.
NCBI ID   WP_394004426.1    Uniprot ID   -
Organism   Luteimonas sp. WGS1318     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1059490..1070008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3M1_RS04855 (ACF3M1_04855) - 1063320..1064318 (-) 999 WP_394004424.1 polyprenyl synthetase family protein -
  ACF3M1_RS04860 (ACF3M1_04860) ssb 1064490..1065008 (+) 519 WP_394004426.1 single-stranded DNA-binding protein Machinery gene
  ACF3M1_RS04865 (ACF3M1_04865) - 1065089..1066816 (-) 1728 WP_394004428.1 peptide MFS transporter -
  ACF3M1_RS04870 (ACF3M1_04870) - 1066947..1068911 (+) 1965 WP_394005183.1 alpha/beta hydrolase family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18485.28 Da        Isoelectric Point: 5.9553

>NTDB_id=1060277 ACF3M1_RS04860 WP_394004426.1 1064490..1065008(+) (ssb) [Luteimonas sp. WGS1318]
MARGVNKVILVGNLGNDPDTKYTQGGMAVTRISLATTSVRNDKDGNKQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
EIRYDKYTGQDGVEKYSTDIVANEMQMLGGRGDGGGGGGAGNYERGNRPQRSAGGGGGDAPQQRGPAPSRQSAPQQQRPA
PMDDFSDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1060277 ACF3M1_RS04860 WP_394004426.1 1064490..1065008(+) (ssb) [Luteimonas sp. WGS1318]
ATGGCCCGCGGCGTCAACAAAGTCATCCTGGTCGGCAATCTCGGCAACGACCCCGACACCAAGTACACCCAGGGCGGCAT
GGCCGTGACCCGCATCAGCCTGGCCACGACCAGCGTGCGCAACGACAAGGACGGCAACAAGCAGGAGCGCACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCCAAGTCTACGTCGAAGGC
GAGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTATTCGACCGACATCGTCGCGAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGACGGCGGCGGCGGTGGAGGCGCTGGCAATTACGAGCGCGGCAATCGTCCGCAGCGTTCGGCCG
GCGGTGGCGGTGGCGATGCCCCGCAGCAGCGCGGTCCCGCGCCGTCGCGCCAGTCGGCTCCGCAGCAGCAGCGTCCCGCG
CCGATGGACGACTTCTCGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.333

100

0.506
  ssb Glaesserella parasuis strain SC1401

45.946

100

0.494
  ssb Neisseria meningitidis MC58

46.328

100

0.477
  ssb Neisseria gonorrhoeae MS11

46.328

100

0.477

Multiple sequence alignment