Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACF3M1_RS03545 Genome accession   NZ_CP171131
Coordinates   800137..801195 (+) Length   352 a.a.
NCBI ID   WP_394003990.1    Uniprot ID   -
Organism   Luteimonas sp. WGS1318     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 795137..806195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3M1_RS03530 (ACF3M1_03530) - 795758..796165 (+) 408 WP_394003986.1 hypothetical protein -
  ACF3M1_RS03535 (ACF3M1_03535) - 796227..796862 (-) 636 WP_394003988.1 hypothetical protein -
  ACF3M1_RS03540 (ACF3M1_03540) - 797400..799943 (-) 2544 WP_394005163.1 penicillin-binding protein 1A -
  ACF3M1_RS03545 (ACF3M1_03545) pilM 800137..801195 (+) 1059 WP_394003990.1 pilus assembly protein PilM Machinery gene
  ACF3M1_RS03550 (ACF3M1_03550) - 801195..801842 (+) 648 WP_394003992.1 PilN domain-containing protein -
  ACF3M1_RS03555 (ACF3M1_03555) - 801839..802516 (+) 678 WP_394003994.1 type 4a pilus biogenesis protein PilO -
  ACF3M1_RS03560 (ACF3M1_03560) - 802534..803055 (+) 522 WP_394005164.1 pilus assembly protein PilP -
  ACF3M1_RS03565 (ACF3M1_03565) - 803070..804947 (+) 1878 WP_394003996.1 type IV pilus secretin PilQ -
  ACF3M1_RS03570 (ACF3M1_03570) - 805107..806099 (+) 993 WP_394003998.1 AAA family ATPase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37658.11 Da        Isoelectric Point: 4.3879

>NTDB_id=1060273 ACF3M1_RS03545 WP_394003990.1 800137..801195(+) (pilM) [Luteimonas sp. WGS1318]
MGLITKSQVPLIGVDISSTAVKLLQLSRQGNRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVSRSGTKAKHAAAA
VAGSAVITKTIPMPADLDEDDLESQVELEAVNYIPYPIEEVNLDFEVLGAMPGNAEMVQVLLAASRSENVELRASALELG
GLSARVVDVEAFAVENAFAMIASTLSMPSDGVVALVDVGATMTTLNVLRNGRSLYSREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYEVEVLEPFKEAMVQQVSRLLQFFYAGSDFNRVDQIVLAGGCASIPGVADMVEEQLGVQTVLANPLA
QMTLGPRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1060273 ACF3M1_RS03545 WP_394003990.1 800137..801195(+) (pilM) [Luteimonas sp. WGS1318]
GTGGGGCTCATCACAAAAAGCCAGGTGCCGCTCATCGGCGTCGACATCAGCTCGACTGCGGTCAAGCTGTTGCAGCTGTC
GCGGCAGGGCAATCGTTATCGCGTGGAGCACTACGCGGTCGAACCGCTGCCGCCGAATGCGGTGGTCGAAAAGAACATCG
TCGAGGTCGAGGCGGTGGGTGAAGCGATCCGTCGCGCGGTCTCCCGGTCGGGGACCAAGGCCAAGCACGCGGCCGCTGCC
GTGGCGGGCTCGGCGGTCATCACCAAGACCATTCCGATGCCGGCCGATCTCGACGAGGACGATCTCGAATCGCAGGTCGA
GCTCGAGGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGTTGGGGGCGATGCCCGGCA
ACGCGGAGATGGTGCAGGTGCTGCTGGCGGCCTCGCGGTCGGAGAACGTCGAGCTGCGCGCCTCCGCGCTCGAACTCGGC
GGCCTGTCCGCTCGGGTCGTCGACGTCGAGGCCTTCGCGGTCGAAAACGCATTCGCGATGATCGCCAGCACGCTGAGCAT
GCCGTCCGACGGCGTGGTCGCGCTGGTCGACGTGGGCGCAACGATGACCACCCTCAACGTGCTCCGCAACGGTCGCAGCC
TGTACTCGCGCGAGCAGGTGTTCGGCGGCAAGCAGCTGACCGACGAGGTCATGCGCCGCTACGGCCTGAGCTACGAGGAA
GCGGGTCTGGCCAAGCGTCAGGGCGGCCTGCCGGAGAGTTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAGGCGATGGT
CCAGCAGGTCAGCCGCCTGCTCCAGTTCTTCTATGCCGGCAGTGATTTCAACCGCGTCGACCAGATCGTGCTGGCCGGCG
GTTGCGCATCGATTCCCGGTGTCGCCGACATGGTGGAGGAGCAACTGGGCGTTCAGACCGTTCTGGCCAATCCGCTGGCG
CAGATGACGCTCGGTCCGCGCGTCCAGGCTCATGCGCTCGCCCAGGACGCGCCGGCGCTGATGATCGCGTGTGGTCTCGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.989

100

0.52
  comM Acinetobacter nosocomialis M2

51.705

100

0.517
  comM Acinetobacter baylyi ADP1

51.17

97.159

0.497
  pilM Legionella pneumophila strain ERS1305867

44.476

100

0.446

Multiple sequence alignment