Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACF3M1_RS03350 Genome accession   NZ_CP171131
Coordinates   752710..754125 (-) Length   471 a.a.
NCBI ID   WP_394003925.1    Uniprot ID   -
Organism   Luteimonas sp. WGS1318     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 747710..759125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3M1_RS03335 (ACF3M1_03335) pilA2 749635..750057 (-) 423 WP_394003921.1 pilin Machinery gene
  ACF3M1_RS03340 (ACF3M1_03340) pilE 750167..750589 (-) 423 WP_394005159.1 pilin Machinery gene
  ACF3M1_RS03345 (ACF3M1_03345) - 750779..752635 (-) 1857 WP_394003923.1 hypothetical protein -
  ACF3M1_RS03350 (ACF3M1_03350) pilR 752710..754125 (-) 1416 WP_394003925.1 sigma-54-dependent transcriptional regulator Regulator
  ACF3M1_RS03355 (ACF3M1_03355) - 754333..755925 (-) 1593 WP_394005160.1 sensor histidine kinase -
  ACF3M1_RS03360 (ACF3M1_03360) sucC 756112..757272 (+) 1161 WP_394003928.1 ADP-forming succinate--CoA ligase subunit beta -
  ACF3M1_RS03365 (ACF3M1_03365) sucD 757361..758233 (+) 873 WP_180545043.1 succinate--CoA ligase subunit alpha -
  ACF3M1_RS03370 (ACF3M1_03370) - 758407..758655 (+) 249 WP_394003930.1 type II toxin-antitoxin system CcdA family antitoxin -
  ACF3M1_RS03375 (ACF3M1_03375) - 758655..758975 (+) 321 WP_394003932.1 CcdB family protein -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 50653.96 Da        Isoelectric Point: 6.3552

>NTDB_id=1060271 ACF3M1_RS03350 WP_394003925.1 752710..754125(-) (pilR) [Luteimonas sp. WGS1318]
MSENRSALIVDDEHDIRELLVLTLGRMGLRTDTAPNLAAAREMLATVAYDLCLTDMRLPDGSGLELVGEIGTRFPGTPVA
VITAYGNVEAAVEALKAGAFDFVSKPVDIHVLRGLVRQALELGERARRTSEEQSSRLLGASDAMVTLRNTIAKVARSQAP
VYINGESGTGKELVARTIHAQGARAGGPFVPVNCGAIPTELMESEFFGHKKGSFTGAHSDKPGLFQAADGGTLFLDEVAE
LPLPMQVKLLRAIQEKCIRPVGASAEVQVDVRLLSATHKDLGALVSDGRFRHDLYYRINVIGLNVPPLRERTGDLPLLSN
AILQRLAQAMHRAPPMLDDDAVAALEAYPFPGNVRELENVLERALAMADGDRITADDLHLPAPPGAPRTQSPVITGTHPA
LPPSSAAPRDPRTVSPYETAGTALPSFIEDIERAAIQQALQENRYNKTKTAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=1060271 ACF3M1_RS03350 WP_394003925.1 752710..754125(-) (pilR) [Luteimonas sp. WGS1318]
ATGAGCGAGAACCGCAGCGCCCTGATCGTCGACGACGAACACGACATCCGTGAACTGCTGGTGCTGACGCTGGGGCGGAT
GGGCCTGCGCACCGACACCGCCCCCAACCTGGCGGCCGCGCGCGAAATGCTGGCCACCGTGGCCTACGATCTCTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCCGGCCTGGAACTGGTCGGCGAGATCGGCACGCGCTTTCCGGGTACGCCGGTCGCG
GTGATCACCGCCTACGGCAATGTCGAGGCCGCGGTCGAGGCGCTGAAGGCAGGTGCCTTCGACTTCGTCAGCAAGCCGGT
CGACATCCACGTGCTGCGCGGCCTGGTCCGCCAGGCGCTGGAACTGGGTGAGCGCGCCCGGCGCACCAGCGAGGAACAGA
GCAGCCGCCTGCTCGGCGCGTCCGATGCCATGGTCACGCTGCGCAACACCATCGCCAAGGTCGCCCGCAGCCAGGCGCCG
GTCTACATCAACGGCGAATCGGGCACTGGCAAGGAGCTCGTGGCCCGCACTATCCACGCCCAGGGCGCGCGTGCCGGCGG
GCCCTTCGTGCCGGTCAACTGCGGCGCGATTCCGACCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGGGCAGCT
TCACCGGCGCGCACAGCGACAAGCCCGGCCTGTTCCAGGCCGCGGACGGTGGCACCCTGTTCCTCGACGAGGTGGCCGAG
CTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTGCATCCGCCCGGTCGGCGCCTCCGCCGAGGT
GCAGGTCGACGTGCGCCTGCTCTCGGCCACCCACAAGGACTTGGGTGCACTGGTCAGTGACGGCCGGTTCCGCCACGACC
TCTACTACCGCATCAACGTCATCGGCCTCAACGTGCCGCCGCTGCGCGAACGCACCGGCGATCTGCCGCTGCTGTCGAAC
GCGATCCTCCAGCGCCTGGCCCAGGCCATGCACCGCGCACCGCCGATGCTCGACGACGACGCCGTCGCCGCGCTCGAGGC
CTACCCGTTCCCCGGCAACGTGCGCGAACTGGAGAACGTGCTCGAACGCGCGCTGGCCATGGCCGACGGCGACCGCATCA
CCGCCGACGACCTGCACCTGCCCGCGCCCCCCGGCGCGCCGCGCACGCAGTCGCCGGTCATCACCGGCACCCACCCTGCC
CTGCCGCCCAGCAGCGCGGCACCGCGCGACCCGCGCACCGTCAGCCCCTACGAGACCGCCGGCACCGCCCTACCCTCCTT
CATCGAGGACATCGAGCGCGCCGCCATCCAGCAGGCGCTGCAGGAAAACCGCTACAACAAGACCAAGACCGCGGCGGCCC
TCGGCATCACGTTCCGAGCGCTGCGTTACAAGCTGAAGAAGCTCGGGATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(138-303)

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

59.362

99.788

0.592
  pilR Acinetobacter baumannii strain A118

49.142

98.938

0.486

Multiple sequence alignment