Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACF3OJ_RS09920 Genome accession   NZ_CP171111
Coordinates   2062777..2063373 (+) Length   198 a.a.
NCBI ID   WP_392405629.1    Uniprot ID   -
Organism   Cardiobacterium hominis strain WGS1530     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2057777..2068373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3OJ_RS09890 (ACF3OJ_09890) nth 2059282..2059914 (-) 633 WP_079541116.1 endonuclease III -
  ACF3OJ_RS09895 (ACF3OJ_09895) - 2059948..2060193 (-) 246 WP_004143528.1 hypothetical protein -
  ACF3OJ_RS09900 (ACF3OJ_09900) - 2060193..2060972 (-) 780 WP_079541114.1 TatD family hydrolase -
  ACF3OJ_RS09905 (ACF3OJ_09905) - 2060972..2061160 (-) 189 WP_126316102.1 hypothetical protein -
  ACF3OJ_RS09910 (ACF3OJ_09910) - 2061210..2061596 (+) 387 WP_079541112.1 hypothetical protein -
  ACF3OJ_RS09915 (ACF3OJ_09915) - 2061589..2062734 (+) 1146 WP_392405628.1 MFS transporter -
  ACF3OJ_RS09920 (ACF3OJ_09920) ssb 2062777..2063373 (+) 597 WP_392405629.1 single-stranded DNA-binding protein Machinery gene
  ACF3OJ_RS09925 (ACF3OJ_09925) - 2064044..2064301 (+) 258 Protein_1939 phosphoesterase -
  ACF3OJ_RS09930 (ACF3OJ_09930) - 2064415..2065422 (+) 1008 WP_392405630.1 IS5 family transposase -
  ACF3OJ_RS09935 (ACF3OJ_09935) - 2065739..2067085 (+) 1347 WP_392405631.1 efflux transporter outer membrane subunit -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21512.25 Da        Isoelectric Point: 4.7066

>NTDB_id=1060143 ACF3OJ_RS09920 WP_392405629.1 2062777..2063373(+) (ssb) [Cardiobacterium hominis strain WGS1530]
MAGVNKVILIGNLGNDPDMRYMPNGEPVANISIATSETWNDKNTGEKREKTEWHRVVAYRRTAEIIGQYTRKGSKLYVEG
RLQTRKWTDQSGQQRYTTEIVADNIQMLDSRGGGEGSFGGNGGGNYPGNRSNSGGYGQQGGGYDQDYGGSYDQDYDAPSG
GNRPQPPTPNKPVPPQNNTGGLGGPTLDQDNFDDDIPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1060143 ACF3OJ_RS09920 WP_392405629.1 2062777..2063373(+) (ssb) [Cardiobacterium hominis strain WGS1530]
ATGGCAGGCGTCAACAAAGTCATACTCATCGGCAACCTGGGCAACGACCCGGACATGCGCTACATGCCCAACGGCGAACC
GGTGGCCAACATCTCCATCGCCACCAGTGAGACCTGGAACGACAAAAACACCGGCGAAAAACGCGAAAAAACCGAATGGC
ACCGCGTCGTCGCCTACCGCCGCACCGCCGAAATCATTGGCCAATACACGCGCAAAGGCAGCAAACTCTACGTCGAAGGC
CGCCTGCAAACCCGCAAATGGACCGACCAAAGCGGCCAACAGCGCTACACCACCGAAATCGTCGCCGACAACATCCAAAT
GCTGGACAGCCGCGGCGGCGGCGAAGGCAGCTTCGGCGGTAATGGCGGCGGCAACTACCCCGGCAACCGCAGCAACAGCG
GCGGCTATGGCCAGCAAGGCGGCGGTTACGACCAAGACTACGGCGGCAGCTACGACCAAGACTACGACGCGCCAAGCGGC
GGCAACCGCCCACAACCGCCCACGCCGAACAAACCCGTGCCGCCACAAAACAACACCGGCGGCCTCGGCGGCCCAACCCT
CGATCAGGACAACTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.941

100

0.571
  ssb Vibrio cholerae strain A1552

50.761

99.495

0.505
  ssb Neisseria gonorrhoeae MS11

44

100

0.444
  ssb Neisseria meningitidis MC58

44.103

98.485

0.434

Multiple sequence alignment