Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACF3OJ_RS03115 | Genome accession | NZ_CP171111 |
| Coordinates | 607742..608173 (-) | Length | 143 a.a. |
| NCBI ID | WP_392406380.1 | Uniprot ID | - |
| Organism | Cardiobacterium hominis strain WGS1530 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 604589..648928 | 607742..608173 | within | 0 |
Gene organization within MGE regions
Location: 604589..648928
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACF3OJ_RS03085 (ACF3OJ_03085) | - | 604589..605017 (-) | 429 | WP_392406373.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| ACF3OJ_RS03090 (ACF3OJ_03090) | - | 605185..605415 (-) | 231 | WP_392406374.1 | hypothetical protein | - |
| ACF3OJ_RS03095 (ACF3OJ_03095) | - | 605466..605759 (-) | 294 | WP_079540343.1 | hypothetical protein | - |
| ACF3OJ_RS03100 (ACF3OJ_03100) | - | 605756..606523 (-) | 768 | WP_392406375.1 | hypothetical protein | - |
| ACF3OJ_RS03105 (ACF3OJ_03105) | - | 606573..607382 (-) | 810 | WP_392406376.1 | DUF2303 family protein | - |
| ACF3OJ_RS03110 (ACF3OJ_03110) | - | 607394..607720 (-) | 327 | WP_392406378.1 | hypothetical protein | - |
| ACF3OJ_RS03115 (ACF3OJ_03115) | ssb | 607742..608173 (-) | 432 | WP_392406380.1 | single-stranded DNA-binding protein | Machinery gene |
| ACF3OJ_RS03120 (ACF3OJ_03120) | - | 608176..608790 (-) | 615 | WP_392406381.1 | lambda exonuclease family protein | - |
| ACF3OJ_RS03125 (ACF3OJ_03125) | - | 608794..609588 (-) | 795 | WP_392406383.1 | recombinase RecT | - |
| ACF3OJ_RS03130 (ACF3OJ_03130) | - | 609591..610562 (-) | 972 | WP_392406385.1 | hypothetical protein | - |
| ACF3OJ_RS03135 (ACF3OJ_03135) | - | 610559..610864 (-) | 306 | WP_079540355.1 | hypothetical protein | - |
| ACF3OJ_RS03140 (ACF3OJ_03140) | - | 610861..611115 (-) | 255 | WP_079540357.1 | hypothetical protein | - |
| ACF3OJ_RS03145 (ACF3OJ_03145) | - | 611112..611393 (-) | 282 | WP_392406387.1 | hypothetical protein | - |
| ACF3OJ_RS03150 (ACF3OJ_03150) | - | 611390..611740 (-) | 351 | WP_392406389.1 | hypothetical protein | - |
| ACF3OJ_RS03155 (ACF3OJ_03155) | - | 611737..611925 (-) | 189 | WP_392406391.1 | hypothetical protein | - |
| ACF3OJ_RS03160 (ACF3OJ_03160) | - | 611922..612257 (-) | 336 | WP_392406392.1 | hypothetical protein | - |
| ACF3OJ_RS03165 (ACF3OJ_03165) | - | 612597..613889 (-) | 1293 | WP_392406393.1 | DUF4236 domain-containing protein | - |
| ACF3OJ_RS03170 (ACF3OJ_03170) | - | 613903..614619 (-) | 717 | WP_392406395.1 | S24 family peptidase | - |
| ACF3OJ_RS03175 (ACF3OJ_03175) | - | 614738..614971 (+) | 234 | WP_392406396.1 | Cro/CI family transcriptional regulator | - |
| ACF3OJ_RS03180 (ACF3OJ_03180) | - | 615045..615299 (+) | 255 | WP_392406398.1 | hypothetical protein | - |
| ACF3OJ_RS03185 (ACF3OJ_03185) | - | 615296..615577 (+) | 282 | WP_392406399.1 | hypothetical protein | - |
| ACF3OJ_RS03190 (ACF3OJ_03190) | - | 615574..616116 (+) | 543 | WP_392406401.1 | hypothetical protein | - |
| ACF3OJ_RS03195 (ACF3OJ_03195) | - | 616113..616421 (+) | 309 | WP_392406402.1 | hypothetical protein | - |
| ACF3OJ_RS03200 (ACF3OJ_03200) | - | 616435..617484 (+) | 1050 | WP_392406403.1 | hypothetical protein | - |
| ACF3OJ_RS03205 (ACF3OJ_03205) | - | 617471..618166 (+) | 696 | WP_392406405.1 | DUF6475 domain-containing protein | - |
| ACF3OJ_RS03210 (ACF3OJ_03210) | - | 618163..618654 (+) | 492 | WP_392406406.1 | hypothetical protein | - |
| ACF3OJ_RS03215 (ACF3OJ_03215) | - | 618644..618820 (+) | 177 | WP_392406408.1 | hypothetical protein | - |
| ACF3OJ_RS03220 (ACF3OJ_03220) | - | 618813..619052 (+) | 240 | WP_392406410.1 | hypothetical protein | - |
| ACF3OJ_RS03225 (ACF3OJ_03225) | - | 619049..619519 (+) | 471 | WP_392406411.1 | recombination protein NinB | - |
| ACF3OJ_RS03230 (ACF3OJ_03230) | - | 619516..619752 (+) | 237 | WP_079540395.1 | hypothetical protein | - |
| ACF3OJ_RS03235 (ACF3OJ_03235) | - | 619752..620090 (+) | 339 | WP_281838796.1 | nuclease domain-containing protein | - |
| ACF3OJ_RS03240 (ACF3OJ_03240) | - | 620087..621067 (+) | 981 | WP_392406413.1 | hypothetical protein | - |
| ACF3OJ_RS03245 (ACF3OJ_03245) | - | 621177..621551 (+) | 375 | WP_392406415.1 | antiterminator Q family protein | - |
| ACF3OJ_RS03250 (ACF3OJ_03250) | - | 621615..621974 (+) | 360 | WP_392406417.1 | helix-turn-helix transcriptional regulator | - |
| ACF3OJ_RS03255 (ACF3OJ_03255) | - | 621971..622501 (+) | 531 | WP_392406419.1 | ImmA/IrrE family metallo-endopeptidase | - |
| ACF3OJ_RS03260 (ACF3OJ_03260) | - | 623130..623987 (+) | 858 | WP_392406421.1 | glycoside hydrolase family 108 protein | - |
| ACF3OJ_RS03265 (ACF3OJ_03265) | - | 623971..624243 (+) | 273 | WP_392406423.1 | hypothetical protein | - |
| ACF3OJ_RS03270 (ACF3OJ_03270) | - | 624227..624634 (+) | 408 | WP_392406424.1 | hypothetical protein | - |
| ACF3OJ_RS03275 (ACF3OJ_03275) | - | 624624..624866 (+) | 243 | WP_392406425.1 | hypothetical protein | - |
| ACF3OJ_RS03280 (ACF3OJ_03280) | - | 624850..625203 (+) | 354 | WP_392406426.1 | hypothetical protein | - |
| ACF3OJ_RS03285 (ACF3OJ_03285) | - | 625203..625694 (+) | 492 | WP_143312253.1 | hypothetical protein | - |
| ACF3OJ_RS03290 (ACF3OJ_03290) | - | 625684..626946 (+) | 1263 | WP_392406429.1 | PBSX family phage terminase large subunit | - |
| ACF3OJ_RS03295 (ACF3OJ_03295) | - | 626955..628388 (+) | 1434 | WP_392406430.1 | DUF935 family protein | - |
| ACF3OJ_RS03300 (ACF3OJ_03300) | - | 628388..629929 (+) | 1542 | WP_392406432.1 | phage minor head protein | - |
| ACF3OJ_RS03305 (ACF3OJ_03305) | - | 629926..630315 (+) | 390 | WP_392406434.1 | hypothetical protein | - |
| ACF3OJ_RS03310 (ACF3OJ_03310) | - | 630431..630958 (+) | 528 | WP_392406435.1 | BRO family protein | - |
| ACF3OJ_RS03315 (ACF3OJ_03315) | - | 630995..631396 (+) | 402 | WP_392406436.1 | hypothetical protein | - |
| ACF3OJ_RS03320 (ACF3OJ_03320) | - | 631393..632196 (+) | 804 | WP_392406438.1 | hypothetical protein | - |
| ACF3OJ_RS03325 (ACF3OJ_03325) | - | 632253..633242 (+) | 990 | WP_079540425.1 | major capsid protein | - |
| ACF3OJ_RS03330 (ACF3OJ_03330) | - | 633242..633712 (+) | 471 | WP_392406439.1 | phage protein Gp36 family protein | - |
| ACF3OJ_RS03335 (ACF3OJ_03335) | - | 633712..634122 (+) | 411 | WP_392406441.1 | phage virion morphogenesis protein | - |
| ACF3OJ_RS03340 (ACF3OJ_03340) | - | 634103..634555 (+) | 453 | WP_392406443.1 | hypothetical protein | - |
| ACF3OJ_RS03345 (ACF3OJ_03345) | - | 634559..635311 (+) | 753 | WP_392406444.1 | hypothetical protein | - |
| ACF3OJ_RS03350 (ACF3OJ_03350) | - | 635321..635482 (+) | 162 | WP_392406446.1 | hypothetical protein | - |
| ACF3OJ_RS03355 (ACF3OJ_03355) | - | 635555..636064 (+) | 510 | WP_392406448.1 | thermonuclease family protein | - |
| ACF3OJ_RS03360 (ACF3OJ_03360) | - | 636048..636323 (+) | 276 | WP_392406449.1 | hypothetical protein | - |
| ACF3OJ_RS03365 (ACF3OJ_03365) | - | 636426..640451 (+) | 4026 | WP_392406451.1 | phage tail tape measure protein | - |
| ACF3OJ_RS03370 (ACF3OJ_03370) | - | 640448..640849 (+) | 402 | WP_392406205.1 | hypothetical protein | - |
| ACF3OJ_RS03375 (ACF3OJ_03375) | - | 640869..644492 (+) | 3624 | WP_392406452.1 | hypothetical protein | - |
| ACF3OJ_RS03380 (ACF3OJ_03380) | - | 644619..645470 (+) | 852 | WP_392406454.1 | hypothetical protein | - |
| ACF3OJ_RS03385 (ACF3OJ_03385) | - | 645470..645790 (+) | 321 | WP_392406456.1 | hypothetical protein | - |
| ACF3OJ_RS03390 (ACF3OJ_03390) | - | 645833..647656 (+) | 1824 | WP_392406458.1 | hypothetical protein | - |
| ACF3OJ_RS03395 (ACF3OJ_03395) | - | 647658..647888 (+) | 231 | WP_392406460.1 | hypothetical protein | - |
| ACF3OJ_RS03400 (ACF3OJ_03400) | - | 647954..648928 (-) | 975 | WP_392406462.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 143 a.a. Molecular weight: 16110.13 Da Isoelectric Point: 7.1664
>NTDB_id=1060135 ACF3OJ_RS03115 WP_392406380.1 607742..608173(-) (ssb) [Cardiobacterium hominis strain WGS1530]
MAGVNKVILIGRLGNDPEMRYMPSGEAVANLSIATSESWTDKTTGAKREKTEWHRVVAFRKLAEIIGQYCKKGDQIYIEG
KLQTRKWTDKNGQDHYTTEIIADQMQMLGNKDNGNRGQSEKPGRFPDPPPNPAPQTFDDDIPF
MAGVNKVILIGRLGNDPEMRYMPSGEAVANLSIATSESWTDKTTGAKREKTEWHRVVAFRKLAEIIGQYCKKGDQIYIEG
KLQTRKWTDKNGQDHYTTEIIADQMQMLGNKDNGNRGQSEKPGRFPDPPPNPAPQTFDDDIPF
Nucleotide
Download Length: 432 bp
>NTDB_id=1060135 ACF3OJ_RS03115 WP_392406380.1 607742..608173(-) (ssb) [Cardiobacterium hominis strain WGS1530]
ATGGCAGGCGTCAACAAAGTCATACTCATCGGCCGCCTCGGCAACGACCCGGAAATGCGTTACATGCCCAGCGGCGAAGC
CGTAGCGAACCTATCCATTGCCACCTCGGAAAGCTGGACGGACAAAACCACCGGCGCAAAACGCGAAAAAACCGAATGGC
ACCGAGTCGTGGCCTTCCGCAAGCTGGCGGAAATCATCGGCCAGTACTGCAAGAAAGGCGACCAAATCTACATCGAGGGC
AAGCTGCAAACCCGCAAATGGACCGACAAGAACGGTCAAGACCACTACACCACCGAAATCATTGCTGACCAGATGCAGAT
GCTTGGCAATAAAGACAACGGCAACCGGGGACAAAGCGAGAAGCCGGGACGGTTTCCCGATCCACCGCCGAACCCTGCCC
CGCAAACCTTTGACGACGACATACCCTTTTAA
ATGGCAGGCGTCAACAAAGTCATACTCATCGGCCGCCTCGGCAACGACCCGGAAATGCGTTACATGCCCAGCGGCGAAGC
CGTAGCGAACCTATCCATTGCCACCTCGGAAAGCTGGACGGACAAAACCACCGGCGCAAAACGCGAAAAAACCGAATGGC
ACCGAGTCGTGGCCTTCCGCAAGCTGGCGGAAATCATCGGCCAGTACTGCAAGAAAGGCGACCAAATCTACATCGAGGGC
AAGCTGCAAACCCGCAAATGGACCGACAAGAACGGTCAAGACCACTACACCACCGAAATCATTGCTGACCAGATGCAGAT
GCTTGGCAATAAAGACAACGGCAACCGGGGACAAAGCGAGAAGCCGGGACGGTTTCCCGATCCACCGCCGAACCCTGCCC
CGCAAACCTTTGACGACGACATACCCTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
49.444 |
100 |
0.622 |
| ssb | Vibrio cholerae strain A1552 |
50.289 |
100 |
0.608 |
| ssb | Neisseria gonorrhoeae MS11 |
44 |
100 |
0.538 |
| ssb | Neisseria meningitidis MC58 |
42.775 |
100 |
0.517 |