Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACF3OJ_RS02635 Genome accession   NZ_CP171111
Coordinates   504965..505342 (+) Length   125 a.a.
NCBI ID   WP_004139288.1    Uniprot ID   -
Organism   Cardiobacterium hominis strain WGS1530     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 499965..510342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3OJ_RS02615 (ACF3OJ_02615) - 500005..501486 (+) 1482 WP_392406310.1 Ppx/GppA family phosphatase -
  ACF3OJ_RS02620 (ACF3OJ_02620) lpdA 501547..503337 (-) 1791 WP_392406312.1 dihydrolipoyl dehydrogenase -
  ACF3OJ_RS02625 (ACF3OJ_02625) trxB 503389..504363 (-) 975 WP_392406313.1 thioredoxin-disulfide reductase -
  ACF3OJ_RS02630 (ACF3OJ_02630) ruvX 504487..504891 (+) 405 WP_004139286.1 Holliday junction resolvase RuvX -
  ACF3OJ_RS02635 (ACF3OJ_02635) pilG 504965..505342 (+) 378 WP_004139288.1 PleD family two-component system response regulator Regulator
  ACF3OJ_RS02640 (ACF3OJ_02640) - 505358..505717 (+) 360 WP_004139290.1 response regulator transcription factor -
  ACF3OJ_RS02645 (ACF3OJ_02645) - 505714..506250 (+) 537 WP_079542302.1 chemotaxis protein CheW -
  ACF3OJ_RS02650 (ACF3OJ_02650) - 506264..507526 (+) 1263 WP_040354430.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 13803.06 Da        Isoelectric Point: 9.4688

>NTDB_id=1060134 ACF3OJ_RS02635 WP_004139288.1 504965..505342(+) (pilG) [Cardiobacterium hominis strain WGS1530]
MSDKKSVKVLVVDDSGTIRKTAEAILTKEGYTVATAEDGFSALSKVMSFKPDLIFLDIMMPRLDGYQVCSVIKSNAAFAK
TPVLMLSSKDSIFDKARGRIAGSEYFMTKPFSRDELLNAIRTHVQ

Nucleotide


Download         Length: 378 bp        

>NTDB_id=1060134 ACF3OJ_RS02635 WP_004139288.1 504965..505342(+) (pilG) [Cardiobacterium hominis strain WGS1530]
GTGTCTGATAAAAAATCCGTGAAAGTGCTCGTAGTGGACGATAGCGGCACGATCCGGAAAACCGCCGAGGCCATCCTCAC
CAAAGAAGGCTACACCGTGGCCACCGCTGAAGACGGCTTCAGCGCTTTGTCCAAAGTCATGTCGTTCAAACCCGACCTCA
TCTTCCTCGACATCATGATGCCGCGGCTTGATGGCTATCAGGTCTGCTCCGTCATCAAGAGCAACGCCGCCTTTGCCAAA
ACGCCGGTGCTGATGCTTTCCAGTAAAGACAGCATCTTCGACAAGGCGCGCGGTCGCATTGCCGGGTCTGAATACTTCAT
GACCAAACCCTTTTCGCGTGACGAATTGCTCAATGCCATCCGCACGCACGTACAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

60

96

0.576
  vicR Streptococcus mutans UA159

44.915

94.4

0.424
  pilH Synechocystis sp. PCC 6803

43.363

90.4

0.392
  micA Streptococcus pneumoniae Cp1015

44.037

87.2

0.384

Multiple sequence alignment