Detailed information NTG1060124

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF3NW_RS10220
• Genome accession: NZ_CP171110
• Coordinates: 1994677..1995534 (+)
• Length: 285 a.a.
• NCBI ID: WP_314250912.1
• Uniprot ID: -
• Organism: Eikenella halliae strain WGS1533
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1989677..2000534

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF3NW_RS10205 (ACF3NW_10205)	recJ	1989712..1991409 (+)	1698	WP_314250918.1	single-stranded-DNA-specific exonuclease RecJ	-
ACF3NW_RS10210 (ACF3NW_10210)	pilF	1991652..1993328 (+)	1677	WP_314250916.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACF3NW_RS10215 (ACF3NW_10215)	pilG	1993359..1994594 (+)	1236	WP_314250914.1	type II secretion system F family protein	Machinery gene
ACF3NW_RS10220 (ACF3NW_10220)	pilD	1994677..1995534 (+)	858	WP_314250912.1	A24 family peptidase	Machinery gene
ACF3NW_RS10225 (ACF3NW_10225)	coaE	1995536..1996141 (+)	606	WP_314250910.1	dephospho-CoA kinase	-
ACF3NW_RS10230 (ACF3NW_10230)	zapD	1996145..1996921 (+)	777	WP_314250908.1	cell division protein ZapD	-
ACF3NW_RS10235 (ACF3NW_10235)	yacG	1996918..1997100 (+)	183	WP_003823528.1	DNA gyrase inhibitor YacG	-
ACF3NW_RS10240 (ACF3NW_10240)	rlmD	1997167..1998459 (+)	1293	WP_392423317.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	-
ACF3NW_RS10245 (ACF3NW_10245)	-	1998944..1999249 (-)	306	WP_314250901.1	hypothetical protein	-
ACF3NW_RS10250 (ACF3NW_10250)	trmA	1999439..2000533 (-)	1095	WP_314250899.1	tRNA (uridine(54)-C5)-methyltransferase TrmA	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 31452.54 Da
• Isoelectric Point: 8.7511

>NTDB_id=1060124 ACF3NW_RS10220 WP_314250912.1 1994677..1995534(+) (pilD) [Eikenella halliae strain WGS1533]
MTNLDPEIYIPFAVLLGLLVGSFLNVVIYRLPVMLEKQWRIAAKQHLELPLDEEDQKPFNISTPPSRCPKCGSPVKPWQN
IPIISYLLLRGRCHSCHTPIGWRYPAVELLTGILFGIVAWRYGYTWLTLGGLVFTAVLVALTFIDADTQLLPDQLTLPLI
WLGLLFNWQVGFVSLPSALLGAVVGYLSLWLLYHLFKLITGKEGMGYGDFKLLAALGAWLGVSTLPVIVFVAALVGLVAA
LVMRAAKGQPIAFGPALAIAGWLVFAANSYILQGIQWWLHKSGFI

Nucleotide

• Length: 858 bp

>NTDB_id=1060124 ACF3NW_RS10220 WP_314250912.1 1994677..1995534(+) (pilD) [Eikenella halliae strain WGS1533]
ATGACCAATCTTGATCCAGAAATCTACATCCCCTTCGCCGTCCTGCTCGGCCTGCTGGTGGGCAGCTTTCTCAACGTGGT
TATCTACCGCCTGCCGGTCATGCTCGAGAAACAATGGCGCATCGCGGCTAAGCAGCATCTCGAACTGCCGCTGGACGAAG
AAGACCAAAAACCGTTCAACATCAGCACCCCGCCCTCGCGCTGCCCCAAATGCGGCAGCCCGGTGAAACCGTGGCAAAAT
ATCCCCATCATCAGCTATCTGCTGCTGCGCGGCCGCTGCCATAGCTGCCACACCCCCATCGGCTGGCGTTACCCCGCCGT
CGAGCTGCTCACCGGCATCCTTTTTGGCATCGTCGCCTGGCGCTACGGCTACACTTGGCTCACCCTTGGCGGCCTCGTGT
TCACCGCCGTGTTGGTTGCCCTCACCTTTATCGATGCCGACACCCAGCTCTTGCCCGACCAACTTACCTTGCCCCTGATT
TGGCTCGGATTGCTGTTCAACTGGCAGGTCGGCTTCGTCAGCCTGCCTTCAGCCCTGCTCGGCGCCGTGGTCGGCTATTT
GAGCCTCTGGCTGCTGTATCACCTGTTCAAACTCATCACCGGCAAAGAAGGCATGGGCTATGGCGACTTCAAACTGCTCG
CCGCACTGGGCGCCTGGCTCGGCGTTAGCACCCTGCCCGTTATTGTTTTCGTTGCCGCCTTGGTTGGACTGGTTGCCGCC
CTGGTGATGCGTGCCGCCAAAGGCCAGCCCATTGCCTTCGGCCCCGCGCTCGCCATTGCCGGCTGGCTGGTTTTCGCTGC
CAACAGCTACATCCTGCAAGGCATCCAATGGTGGCTGCACAAATCCGGATTCATCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-122)

• Type IV leader peptidase family (Peptidase_A24) (132-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	64.444	94.737	0.611
pilD	Acinetobacter nosocomialis M2	50	95.439	0.477
pilD	Acinetobacter baumannii D1279779	49.632	95.439	0.474
pilD	Vibrio cholerae strain A1552	50	92.632	0.463
pilD	Vibrio campbellii strain DS40M4	49.81	92.281	0.46