Detailed information NTG1059318

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACFX5Z_RS19665
• Genome accession: NZ_CP170761
• Coordinates: 4288962..4289834 (+)
• Length: 290 a.a.
• NCBI ID: WP_201889602.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain CWH5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4283962..4294834

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFX5Z_RS19645 (ACFX5Z_19645)	nadC	4284257..4285114 (+)	858	WP_010635962.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACFX5Z_RS19650 (ACFX5Z_19650)	-	4285436..4285876 (+)	441	WP_010635961.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ACFX5Z_RS19655 (ACFX5Z_19655)	pilB	4285867..4287582 (+)	1716	WP_185450531.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
ACFX5Z_RS19660 (ACFX5Z_19660)	pilC	4287698..4288939 (+)	1242	WP_010635960.1	type II secretion system F family protein	Machinery gene
ACFX5Z_RS19665 (ACFX5Z_19665)	pilD	4288962..4289834 (+)	873	WP_201889602.1	A24 family peptidase	Machinery gene
ACFX5Z_RS19670 (ACFX5Z_19670)	coaE	4289854..4290468 (+)	615	WP_126880609.1	dephospho-CoA kinase	-
ACFX5Z_RS19675 (ACFX5Z_19675)	zapD	4290506..4291228 (+)	723	WP_026141277.1	cell division protein ZapD	-
ACFX5Z_RS19680 (ACFX5Z_19680)	yacG	4291238..4291432 (+)	195	WP_017782442.1	DNA gyrase inhibitor YacG	-
ACFX5Z_RS19685 (ACFX5Z_19685)	mutT	4291493..4291906 (-)	414	WP_005305665.1	8-oxo-dGTP diphosphatase MutT	-
ACFX5Z_RS19690 (ACFX5Z_19690)	-	4291915..4293093 (-)	1179	WP_279452164.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32550.91 Da
• Isoelectric Point: 6.7410

>NTDB_id=1059318 ACFX5Z_RS19665 WP_201889602.1 4288962..4289834(+) (pilD) [Aeromonas dhakensis strain CWH5]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLSYFNPETQLQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=1059318 ACFX5Z_RS19665 WP_201889602.1 4288962..4289834(+) (pilD) [Aeromonas dhakensis strain CWH5]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTGGTATTCCTCTTCTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATACCTCAGCTATTTCA
ACCCAGAGACACAACTGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGTCGCTGCCGTGAATGTCAGGCCCCCATCTC
GGCCCGTTATCCGCTGGTGGAGCTGTTGACCGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTTCCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCACTGCTGTGGGGTGGCCTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTGGGCTGGCAGGCCCTGCCCATCGTATTGCTGCTCTCCTCCCTG
GTCGGCGCCATCATAGGGATCAGTCTCATCCTGCTGCGCAACCACCATCAGAACAAACCCATCCCCTTCGGGCCCTACCT
GGCGATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.888	98.621	0.61
pilD	Vibrio campbellii strain DS40M4	57.143	98.966	0.566
pilD	Acinetobacter baumannii D1279779	54.577	97.931	0.534
pilD	Acinetobacter nosocomialis M2	54.577	97.931	0.534
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462