Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ACFKHK_RS03460 Genome accession   NZ_CP170760
Coordinates   642254..643057 (+) Length   267 a.a.
NCBI ID   WP_174845894.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 637254..648057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS03435 - 637685..638383 (-) 699 WP_160864593.1 amino acid ABC transporter permease -
  ACFKHK_RS03440 - 638400..639239 (-) 840 WP_392462534.1 transporter substrate-binding domain-containing protein -
  ACFKHK_RS03445 - 639249..640010 (-) 762 WP_392462535.1 amino acid ABC transporter ATP-binding protein -
  ACFKHK_RS03450 micA 640201..640905 (+) 705 WP_174845892.1 response regulator YycF Regulator
  ACFKHK_RS03455 micB 640898..642247 (+) 1350 WP_274505716.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ACFKHK_RS03460 vicX 642254..643057 (+) 804 WP_174845894.1 MBL fold metallo-hydrolase Regulator
  ACFKHK_RS03465 pbp2b 643376..645406 (+) 2031 WP_392462651.1 penicillin-binding protein PBP2B -
  ACFKHK_RS03470 recR 645415..646011 (+) 597 WP_002935848.1 recombination mediator RecR -
  ACFKHK_RS03475 - 646116..647162 (+) 1047 WP_172007384.1 D-alanine--D-alanine ligase -
  ACFKHK_RS03480 - 647275..647655 (+) 381 WP_392462536.1 OsmC family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29639.63 Da        Isoelectric Point: 5.3289

>NTDB_id=1059260 ACFKHK_RS03460 WP_174845894.1 642254..643057(+) (vicX) [Streptococcus parasuis strain FZ2]
MIGTGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPDDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWLAMESKLGKIDVTQKHIFELGSMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDVEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTNKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGTDFQIYDTSPDTATVLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1059260 ACFKHK_RS03460 WP_174845894.1 642254..643057(+) (vicX) [Streptococcus parasuis strain FZ2]
ATGATCGGAACAGGTTTTAATTATAGTATTTTAGCATCCGGGTCTAGTGGAAATTGTTTTTATTTGGAAACGGATAAAAA
GAAAATTTTAGTGGATGCAGGTTTATCGGGGAAAAAAATCACTAGTCTTTTGGCAGAAATTGACCGAAAACCAGATGATA
TTGATGCCATTTTAGTCACCCATGAACATAGCGATCATATCCATGGTATAGGAGTGTTAGCTCGTAAATATGGTATGGAT
ATTTATGCCAATGAATTGACCTGGCTGGCAATGGAAAGCAAGCTGGGCAAAATTGATGTCACCCAAAAACACATTTTTGA
ATTGGGCTCAATGAAAACTTTTGGAGACCTGGATATTGAGTCATTTGGTGTCAGCCACGATGCTGCTTGTCCGCAGTTCT
ACCGCTTTATGAAGGATGATAAATCCTTTGTTATGTTGACGGATACTGGTTATGTTAGTGACCGAATGGTGGGTATTGTG
GAAAATGCAGATGCCTATTTGATTGAATCCAATCATGATGTTGAAATCCTTCGTTCGGGTTCTTATTCTTGGAATTTGAA
GCAACGGATTTTGTCGGATAAAGGGCATCTTTGTAACGAAGATGGTGCAGATGCCATGATTCGTTCGCTCGGAAATCGGA
CCAATAAGATTTACCTAGGGCATCTATCAAAGGAAAATAATATCAAGGAACTGGCACATATGACTATGGTTAACCAATTG
GCACAAGCTGATTTAGGTGTTGGTACAGATTTTCAAATTTATGATACTTCGCCAGATACGGCGACTGTATTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768

Multiple sequence alignment