Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACFKHJ_RS06640 Genome accession   NZ_CP170759
Coordinates   1288347..1289285 (-) Length   312 a.a.
NCBI ID   WP_174845706.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1283347..1294285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHJ_RS06615 prsA 1283623..1284606 (-) 984 WP_392452112.1 peptidylprolyl isomerase PrsA -
  ACFKHJ_RS06620 - 1284669..1285388 (-) 720 WP_216806635.1 O-methyltransferase -
  ACFKHJ_RS06625 - 1285463..1286011 (-) 549 WP_171988747.1 DUF6630 family protein -
  ACFKHJ_RS06630 - 1286024..1286470 (-) 447 WP_392453238.1 hypothetical protein -
  ACFKHJ_RS06635 pepF 1286472..1288274 (-) 1803 WP_174845705.1 oligoendopeptidase F Regulator
  ACFKHJ_RS06640 coiA 1288347..1289285 (-) 939 WP_174845706.1 competence protein CoiA family protein Machinery gene
  ACFKHJ_RS06645 metG 1289360..1291363 (-) 2004 WP_174845707.1 methionine--tRNA ligase -
  ACFKHJ_RS06650 - 1291519..1292112 (+) 594 WP_239604003.1 DUF1361 domain-containing protein -
  ACFKHJ_RS06655 - 1292156..1292416 (-) 261 WP_239604004.1 hypothetical protein -
  ACFKHJ_RS06660 - 1293193..1293279 (-) 87 WP_392453240.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 36520.41 Da        Isoelectric Point: 8.3763

>NTDB_id=1059215 ACFKHJ_RS06640 WP_174845706.1 1288347..1289285(-) (coiA) [Streptococcus parasuis strain FZ1]
MLIALDEDGQVFNVLENPAPQGRYFCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESTQHLSLKSCLYRWLVKAER
VELEKCLPELGQIADLFVNDCLVMEVQCSSLPISRLQLRTQAYREAGYLVLWLLGKDLWLKERLTNLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLEILRQPFAKQILSSMTCPMDEDLPRYIAQQLYYKSPKWL
ALQAEAYGRGENLLTKTVFDWFPHIRLPRSAIGFTQIQVNLNSVYQDFDGYYARVKDKRNQVLYPPVIYLKK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1059215 ACFKHJ_RS06640 WP_174845706.1 1288347..1289285(-) (coiA) [Streptococcus parasuis strain FZ1]
ATGTTAATTGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCACAAGGTCGATATTTTTGTCC
AGGTTGTGGAGGCCTAGTCCGGTACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCACGTCACCCTGCGGGACTGCC
ACTATTTTTCCGAGAATGAGTCCACCCAACATCTCTCCCTCAAGTCTTGTCTGTACAGGTGGTTAGTCAAGGCCGAACGA
GTTGAACTTGAAAAATGCCTGCCGGAGTTAGGTCAGATAGCGGACTTATTTGTCAATGATTGTTTAGTCATGGAAGTCCA
ATGTTCCAGTCTGCCGATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCGTGAGGCTGGTTATCTGGTTCTTTGGTTGC
TTGGCAAGGATTTGTGGCTCAAGGAACGACTGACCAATTTGCACAAGCAATTTCTCTCTTTTAGTATGAATATGGGTTTT
CACCTCTGGGAATTGGATGACGAGAAAAAAGAATTGCGGCTCCGTTACCTTATTCATGAAGACTTACGAGGTAAGGTCCA
TTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGAAATCTTGCGTCAGCCCTTTGCCAAGCAAATCCTAT
CTAGCATGACTTGTCCTATGGATGAGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAAATGGCTC
GCTCTGCAAGCGGAAGCTTATGGACGTGGAGAAAATCTACTGACCAAGACAGTATTTGACTGGTTTCCCCACATCCGACT
GCCCCGCTCTGCCATTGGCTTTACCCAGATACAGGTAAATTTGAACTCGGTTTACCAGGACTTTGATGGCTATTATGCTA
GGGTTAAAGACAAGAGAAATCAAGTCCTTTATCCACCGGTTATTTACCTTAAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.871

99.359

0.535
  coiA Streptococcus pneumoniae TIGR4

51.613

99.359

0.513
  coiA Streptococcus pneumoniae Rx1

51.613

99.359

0.513
  coiA Streptococcus pneumoniae D39

51.613

99.359

0.513
  coiA Streptococcus pneumoniae R6

51.613

99.359

0.513
  coiA Lactococcus lactis subsp. cremoris KW2

42.812

100

0.439

Multiple sequence alignment