Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACE83Q_RS06095 Genome accession   NZ_CP170736
Coordinates   1233059..1233586 (+) Length   175 a.a.
NCBI ID   WP_409021851.1    Uniprot ID   -
Organism   Dellaglioa sp. P0083     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1228059..1238586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE83Q_RS06085 (ACE83Q_06090) gyrA 1230080..1232530 (+) 2451 WP_409022827.1 DNA gyrase subunit A -
  ACE83Q_RS06090 (ACE83Q_06095) rpsF 1232728..1233021 (+) 294 WP_409021850.1 30S ribosomal protein S6 -
  ACE83Q_RS06095 (ACE83Q_06100) ssb 1233059..1233586 (+) 528 WP_409021851.1 single-stranded DNA-binding protein Machinery gene
  ACE83Q_RS06100 (ACE83Q_06105) rpsR 1233605..1233859 (+) 255 WP_057974148.1 30S ribosomal protein S18 -
  ACE83Q_RS06105 (ACE83Q_06110) - 1233984..1235996 (+) 2013 WP_409021852.1 DHH family phosphoesterase -
  ACE83Q_RS06110 (ACE83Q_06115) rplI 1236003..1236458 (+) 456 WP_409021853.1 50S ribosomal protein L9 -
  ACE83Q_RS06115 (ACE83Q_06120) dnaB 1236542..1237933 (+) 1392 WP_409021854.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18906.32 Da        Isoelectric Point: 4.6579

>NTDB_id=1059011 ACE83Q_RS06095 WP_409021851.1 1233059..1233586(+) (ssb) [Dellaglioa sp. P0083]
MINRTVLVGRLTRDPDLRYTASGAAVATFTVAVNRQFTNASGEREADFINCVIWRKAAENFANFTHKGSLIGVDGRIQTR
SYDNQQGTRVYVTEVVVENFSLLESKSQSSQQQGNANNQSSAPQSSSSSNNNANPFGGASSNNNSNTTQSNDSATVDPFA
NNGQQIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1059011 ACE83Q_RS06095 WP_409021851.1 1233059..1233586(+) (ssb) [Dellaglioa sp. P0083]
ATGATTAATAGAACAGTACTTGTCGGACGTTTAACAAGAGACCCTGATTTACGCTACACAGCTAGTGGTGCTGCAGTTGC
AACTTTTACAGTTGCAGTTAATCGACAATTCACGAACGCTTCTGGCGAACGTGAAGCCGATTTTATTAACTGTGTTATCT
GGCGAAAAGCAGCCGAGAACTTCGCTAACTTTACGCATAAAGGTTCTTTGATTGGTGTCGATGGACGAATTCAAACGCGT
TCATATGATAATCAACAAGGAACTCGCGTGTATGTTACTGAAGTTGTCGTCGAAAACTTTTCGTTGCTTGAATCAAAATC
TCAATCAAGCCAACAACAAGGTAACGCTAATAATCAAAGCAGCGCTCCTCAATCAAGTTCATCATCAAATAACAATGCTA
ACCCATTTGGTGGCGCAAGTTCGAATAATAATTCAAACACAACGCAATCTAATGATTCAGCAACAGTTGATCCATTTGCA
AATAATGGCCAACAAATTGATATTTCTGATGACGACCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

66.286

100

0.663
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.714

100

0.617
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.111

61.714

0.377

Multiple sequence alignment