Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFYG5_RS12395 Genome accession   NZ_CP170721
Coordinates   2628535..2629041 (-) Length   168 a.a.
NCBI ID   WP_395116683.1    Uniprot ID   A0AB74UM35
Organism   Rhodanobacter sp. FW102-FHT14D07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2623535..2634041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFYG5_RS12375 (ACFYG5_12375) - 2625107..2625883 (+) 777 WP_395116691.1 hypothetical protein -
  ACFYG5_RS12380 (ACFYG5_12380) - 2625960..2626544 (+) 585 WP_395116689.1 RNA polymerase sigma factor -
  ACFYG5_RS12385 (ACFYG5_12385) - 2626541..2627176 (+) 636 WP_395116687.1 zf-HC2 domain-containing protein -
  ACFYG5_RS12390 (ACFYG5_12390) - 2627173..2628477 (+) 1305 WP_395116685.1 S8 family serine peptidase -
  ACFYG5_RS12395 (ACFYG5_12395) ssb 2628535..2629041 (-) 507 WP_395116683.1 single-stranded DNA-binding protein Machinery gene
  ACFYG5_RS12400 (ACFYG5_12400) - 2629429..2629872 (-) 444 WP_395116681.1 Hsp20/alpha crystallin family protein -
  ACFYG5_RS12405 (ACFYG5_12405) - 2630115..2631194 (+) 1080 WP_395116679.1 efflux RND transporter periplasmic adaptor subunit -
  ACFYG5_RS12410 (ACFYG5_12410) - 2631191..2632438 (+) 1248 WP_395116677.1 ABC transporter permease -
  ACFYG5_RS12415 (ACFYG5_12415) - 2632438..2633118 (+) 681 WP_395116675.1 ABC transporter ATP-binding protein -
  ACFYG5_RS12420 (ACFYG5_12420) - 2633340..2633543 (-) 204 WP_395116673.1 dodecin family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18131.83 Da        Isoelectric Point: 5.9715

>NTDB_id=1058870 ACFYG5_RS12395 WP_395116683.1 2628535..2629041(-) (ssb) [Rhodanobacter sp. FW102-FHT14D07]
MARGVNKVILIGNLGSDPEVRSTGSGTTVCSFSLATSESWTDKQSGEKQERTEWHRIKIFGRLGEIAGEYLKKGRQVYIE
GSIRTDKFTGKDGVEKYFTDIIANEMQMLGSNEGGGGGGYQRERPQGGQRQGGGNYGGQSRGNDDRGSSRPSSPAPADNG
FTDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1058870 ACFYG5_RS12395 WP_395116683.1 2628535..2629041(-) (ssb) [Rhodanobacter sp. FW102-FHT14D07]
ATGGCACGTGGCGTCAACAAAGTCATCCTGATCGGCAACCTGGGCTCGGACCCCGAGGTACGCAGCACCGGCAGCGGCAC
TACCGTATGCAGCTTCAGCCTGGCCACCTCCGAGTCGTGGACCGACAAGCAGAGCGGCGAAAAGCAGGAACGCACCGAGT
GGCACCGCATCAAGATCTTCGGCCGCCTCGGCGAGATCGCCGGCGAGTACCTGAAAAAGGGCCGCCAAGTCTATATTGAA
GGCTCCATCCGCACCGACAAGTTCACCGGCAAGGATGGCGTGGAAAAGTATTTCACCGACATCATCGCCAACGAGATGCA
GATGCTCGGCAGCAATGAGGGCGGCGGCGGTGGCGGCTACCAGCGCGAACGTCCGCAGGGCGGCCAGCGCCAGGGCGGCG
GCAACTACGGCGGCCAGTCCCGCGGCAACGACGATCGCGGCTCCTCGCGCCCGTCCTCGCCGGCCCCGGCCGACAACGGC
TTCACGGACGACGAGATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

46.552

100

0.482
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.482
  ssb Vibrio cholerae strain A1552

44.633

100

0.47
  ssb Glaesserella parasuis strain SC1401

43.889

100

0.47

Multiple sequence alignment