Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   AAA982_RS09570 Genome accession   NZ_AP028601
Coordinates   1846469..1847422 (-) Length   317 a.a.
NCBI ID   WP_044813830.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1841469..1852422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA982_RS09540 (TKY113292_18570) - 1842230..1842853 (-) 624 WP_000932636.1 hypothetical protein -
  AAA982_RS09545 (TKY113292_18580) jag 1842904..1843890 (-) 987 WP_000260015.1 RNA-binding cell elongation regulator Jag/EloR -
  AAA982_RS09550 (TKY113292_18590) - 1843909..1844733 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  AAA982_RS09555 (TKY113292_18600) rnpA 1844708..1845079 (-) 372 WP_000739246.1 ribonuclease P protein component -
  AAA982_RS09560 - 1845096..1845227 (-) 132 WP_000768904.1 hypothetical protein -
  AAA982_RS09565 (TKY113292_18610) - 1845228..1846418 (-) 1191 WP_050085692.1 acetate kinase -
  AAA982_RS09570 (TKY113292_18620) comYH 1846469..1847422 (-) 954 WP_044813830.1 class I SAM-dependent methyltransferase Machinery gene
  AAA982_RS09575 - 1847483..1848077 (-) 595 Protein_1860 methyltransferase domain-containing protein -
  AAA982_RS09580 (TKY113292_18650) comGG/cglG 1848180..1848626 (-) 447 WP_001811371.1 competence type IV pilus minor pilin ComGG Machinery gene
  AAA982_RS09585 comGF/cglF 1848604..1849065 (-) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  AAA982_RS09590 (TKY113292_18670) comGE/cglE 1849028..1849330 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  AAA982_RS09595 (TKY113292_18680) comGD/cglD 1849293..1849697 (-) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  AAA982_RS09600 (TKY113292_18690) comGC/cglC 1849690..1850016 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  AAA982_RS09605 (TKY113292_18700) comGB/cglB 1850018..1851034 (-) 1017 WP_138028521.1 competence type IV pilus assembly protein ComGB Machinery gene
  AAA982_RS09610 (TKY113292_18710) comGA/cglA/cilD 1850982..1851923 (-) 942 WP_016398028.1 competence type IV pilus ATPase ComGA Machinery gene
  AAA982_RS09615 (TKY113292_18720) - 1851999..1852364 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35688.93 Da        Isoelectric Point: 4.2952

>NTDB_id=105838 AAA982_RS09570 WP_044813830.1 1846469..1847422(-) (comYH) [Streptococcus pneumoniae strain PF1]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEMDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=105838 AAA982_RS09570 WP_044813830.1 1846469..1847422(-) (comYH) [Streptococcus pneumoniae strain PF1]
ATGGATTTTGAAAAAATTGAACAAGCCTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCAGATGCCATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAATGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTCGG
CTATTATCCTGATGACGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTAATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536

Multiple sequence alignment