Detailed information NTG1058346

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: ACFXAB_RS10890
• Genome accession: NZ_CP170650
• Coordinates: 2133466..2133903 (+)
• Length: 145 a.a.
• NCBI ID: WP_007612572.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain JP5039
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2128466..2138903

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFXAB_RS10865 (ACFXAB_10865)	-	2128480..2129781 (-)	1302	WP_029973873.1	hemolysin family protein	-
ACFXAB_RS10870 (ACFXAB_10870)	-	2129926..2130876 (+)	951	WP_014418379.1	magnesium transporter CorA family protein	-
ACFXAB_RS10875 (ACFXAB_10875)	comGA	2131069..2132139 (+)	1071	WP_014418378.1	competence type IV pilus ATPase ComGA	Machinery gene
ACFXAB_RS10880 (ACFXAB_10880)	comGB	2132126..2133163 (+)	1038	WP_014418377.1	competence type IV pilus assembly protein ComGB	Machinery gene
ACFXAB_RS10885 (ACFXAB_10885)	comGC	2133168..2133476 (+)	309	WP_014418376.1	competence type IV pilus major pilin ComGC	Machinery gene
ACFXAB_RS10890 (ACFXAB_10890)	comGD	2133466..2133903 (+)	438	WP_007612572.1	competence type IV pilus minor pilin ComGD	Machinery gene
ACFXAB_RS10895 (ACFXAB_10895)	comGE	2133887..2134201 (+)	315	WP_032863566.1	competence type IV pilus minor pilin ComGE	Machinery gene
ACFXAB_RS10900 (ACFXAB_10900)	comGF	2134215..2134610 (+)	396	WP_014721501.1	competence type IV pilus minor pilin ComGF	-
ACFXAB_RS10905 (ACFXAB_10905)	comGG	2134611..2134988 (+)	378	WP_014418373.1	competence type IV pilus minor pilin ComGG	Machinery gene
ACFXAB_RS10910 (ACFXAB_10910)	-	2135045..2135224 (+)	180	WP_003153093.1	YqzE family protein	-
ACFXAB_RS10915 (ACFXAB_10915)	-	2135265..2135594 (-)	330	WP_014418372.1	DUF3889 domain-containing protein	-
ACFXAB_RS10920 (ACFXAB_10920)	tapA	2135853..2136524 (+)	672	WP_014418371.1	amyloid fiber anchoring/assembly protein TapA	-
ACFXAB_RS10925 (ACFXAB_10925)	sipW	2136496..2137080 (+)	585	WP_014418370.1	signal peptidase I SipW	-
ACFXAB_RS10930 (ACFXAB_10930)	tasA	2137145..2137930 (+)	786	WP_007408329.1	biofilm matrix protein TasA	-
ACFXAB_RS10935 (ACFXAB_10935)	sinR	2137978..2138313 (-)	336	WP_003153104.1	transcriptional regulator SinR	Regulator
ACFXAB_RS10940 (ACFXAB_10940)	sinI	2138347..2138520 (-)	174	WP_014418369.1	anti-repressor SinI	Regulator

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16254.76 Da
• Isoelectric Point: 10.1850

>NTDB_id=1058346 ACFXAB_RS10890 WP_007612572.1 2133466..2133903(+) (comGD) [Bacillus velezensis strain JP5039]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPVCTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide

• Length: 438 bp

>NTDB_id=1058346 ACFXAB_RS10890 WP_007612572.1 2133466..2133903(+) (comGD) [Bacillus velezensis strain JP5039]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTACTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGATTCGCTTCACATTACGCTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATACAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Bacillus subtilis subsp. subtilis str. 168	55.479	100	0.559