Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | ACFXAB_RS10880 | Genome accession | NZ_CP170650 |
| Coordinates | 2132126..2133163 (+) | Length | 345 a.a. |
| NCBI ID | WP_014418377.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain JP5039 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2127126..2138163
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFXAB_RS10860 (ACFXAB_10860) | - | 2127612..2128442 (+) | 831 | WP_014418381.1 | STAS domain-containing protein | - |
| ACFXAB_RS10865 (ACFXAB_10865) | - | 2128480..2129781 (-) | 1302 | WP_029973873.1 | hemolysin family protein | - |
| ACFXAB_RS10870 (ACFXAB_10870) | - | 2129926..2130876 (+) | 951 | WP_014418379.1 | magnesium transporter CorA family protein | - |
| ACFXAB_RS10875 (ACFXAB_10875) | comGA | 2131069..2132139 (+) | 1071 | WP_014418378.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACFXAB_RS10880 (ACFXAB_10880) | comGB | 2132126..2133163 (+) | 1038 | WP_014418377.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACFXAB_RS10885 (ACFXAB_10885) | comGC | 2133168..2133476 (+) | 309 | WP_014418376.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACFXAB_RS10890 (ACFXAB_10890) | comGD | 2133466..2133903 (+) | 438 | WP_007612572.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ACFXAB_RS10895 (ACFXAB_10895) | comGE | 2133887..2134201 (+) | 315 | WP_032863566.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| ACFXAB_RS10900 (ACFXAB_10900) | comGF | 2134215..2134610 (+) | 396 | WP_014721501.1 | competence type IV pilus minor pilin ComGF | - |
| ACFXAB_RS10905 (ACFXAB_10905) | comGG | 2134611..2134988 (+) | 378 | WP_014418373.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| ACFXAB_RS10910 (ACFXAB_10910) | - | 2135045..2135224 (+) | 180 | WP_003153093.1 | YqzE family protein | - |
| ACFXAB_RS10915 (ACFXAB_10915) | - | 2135265..2135594 (-) | 330 | WP_014418372.1 | DUF3889 domain-containing protein | - |
| ACFXAB_RS10920 (ACFXAB_10920) | tapA | 2135853..2136524 (+) | 672 | WP_014418371.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ACFXAB_RS10925 (ACFXAB_10925) | sipW | 2136496..2137080 (+) | 585 | WP_014418370.1 | signal peptidase I SipW | - |
| ACFXAB_RS10930 (ACFXAB_10930) | tasA | 2137145..2137930 (+) | 786 | WP_007408329.1 | biofilm matrix protein TasA | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39600.91 Da Isoelectric Point: 9.6787
>NTDB_id=1058344 ACFXAB_RS10880 WP_014418377.1 2132126..2133163(+) (comGB) [Bacillus velezensis strain JP5039]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=1058344 ACFXAB_RS10880 WP_014418377.1 2132126..2133163(+) (comGB) [Bacillus velezensis strain JP5039]
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTAAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGTTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCTGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TCATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACCTCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCACTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGCTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCGGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTAAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGTTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCTGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TCATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACCTCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCACTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGCTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCGGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
66.254 |
93.623 |
0.62 |