Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   AAA982_RS08635 Genome accession   NZ_AP028601
Coordinates   1692156..1693160 (-) Length   334 a.a.
NCBI ID   WP_338168272.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1687156..1698160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA982_RS08620 (TKY113292_17070) amiE 1687886..1688953 (-) 1068 WP_000159553.1 ABC transporter ATP-binding protein Regulator
  AAA982_RS08625 (TKY113292_17080) amiD 1688962..1689888 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  AAA982_RS08630 (TKY113292_17100) - 1689888..1691290 (-) 1403 Protein_1708 ABC transporter permease -
  AAA982_RS08635 (TKY113292_17110) amiA 1692156..1693160 (-) 1005 WP_338168272.1 ABC transporter substrate-binding protein Regulator
  AAA982_RS08640 (TKY113292_17120) - 1693847..1695040 (-) 1194 WP_000835622.1 O-antigen ligase -
  AAA982_RS08645 (TKY113292_17130) gtfA 1695178..1696620 (-) 1443 WP_338168273.1 sucrose phosphorylase -
  AAA982_RS08650 (TKY113292_17140) - 1696918..1697751 (-) 834 WP_338168360.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36878.68 Da        Isoelectric Point: 4.6447

>NTDB_id=105826 AAA982_RS08635 WP_338168272.1 1692156..1693160(-) (amiA) [Streptococcus pneumoniae strain PF1]
MKKNRVFATAGLVLLAAGVLAACSSSKSSDSSAPKAYGYVYTADPETLDYLISSKNSTTVVTSNGIDGLFTNDNYGNLAP
AVAEDWEVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKHAADKKSEAMYLAENSVKGLADYLSGTSTDFSTV
GVKAVDDYTLQYTLNQPEPFWNSKLTYSIFWPLNEEFETSKGSDFAKPTDPTSLLYNGPFLLKGLTAKSSVEFVKNEQYW
DKENVHLDTINLAYYDGSDQESLERNFTSGAYSYARLYPTSSNYSKVAEEYKDNIYYTQSGSGIAGLGVNIDRQSYNYTS
KTTDSEKVATKKAF

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=105826 AAA982_RS08635 WP_338168272.1 1692156..1693160(-) (amiA) [Streptococcus pneumoniae strain PF1]
ATGAAAAAAAATCGTGTATTTGCTACAGCAGGTCTTGTTTTATTAGCAGCAGGTGTACTTGCAGCATGCAGTTCTTCAAA
ATCATCTGATTCATCAGCCCCTAAAGCTTATGGCTATGTTTATACAGCAGACCCAGAAACCTTGGACTACCTGATTTCAA
GTAAAAATAGTACAACAGTAGTGACTTCAAATGGGATTGATGGTTTATTCACTAACGATAATTACGGTAATCTTGCTCCT
GCAGTTGCAGAGGATTGGGAAGTCTCTAAGGATGGTTTGACCTACACTTATAAGATTCGTAAAGGGGTTAAATGGTTTAC
CTCTGATGGAGAAGAATATGCAGAGGTGACGGCTAAAGATTTCGTGAACGGTTTAAAACACGCAGCAGATAAAAAATCAG
AAGCTATGTATTTAGCTGAAAATTCGGTTAAAGGCTTGGCAGATTATTTATCAGGAACTTCAACAGATTTTTCAACAGTT
GGTGTCAAGGCGGTTGATGATTATACGTTACAATACACTTTGAACCAGCCTGAACCGTTCTGGAACTCTAAGTTGACCTA
TTCTATTTTCTGGCCTCTGAATGAAGAATTCGAAACATCAAAAGGAAGCGATTTTGCTAAACCAACAGATCCGACATCCT
TGCTTTATAATGGTCCATTCTTGTTGAAAGGGTTGACTGCAAAATCTTCTGTAGAGTTTGTAAAAAATGAGCAATATTGG
GATAAAGAAAATGTCCACCTAGATACTATCAATCTAGCTTACTATGATGGATCAGATCAGGAGTCGCTAGAGCGTAACTT
CACTAGTGGAGCTTATAGTTATGCCCGTCTTTACCCTACCAGCTCCAACTATTCTAAGGTTGCAGAAGAATACAAGGACA
ATATCTATTACACACAATCAGGCTCTGGGATTGCTGGTCTGGGTGTGAATATTGATCGCCAAAGTTACAACTATACTTCT
AAAACTACAGATTCAGAGAAAGTAGCTACTAAGAAGGCATTCTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

65.868

100

0.659
  amiA3 Streptococcus thermophilus LMD-9

65.569

100

0.656
  amiA3 Streptococcus thermophilus LMG 18311

65.269

100

0.653

Multiple sequence alignment