Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFK9X_RS02630 Genome accession   NZ_CP170629
Coordinates   546318..546848 (+) Length   176 a.a.
NCBI ID   WP_000168322.1    Uniprot ID   -
Organism   Salmonella sp. WC3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 541318..551848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFK9X_RS02605 (ACFK9X_02605) - 541575..541973 (+) 399 WP_064507047.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACFK9X_RS02610 (ACFK9X_02610) - 541976..542332 (+) 357 WP_000155666.1 MmcQ/YjbR family DNA-binding protein -
  ACFK9X_RS02615 (ACFK9X_02615) - 542333..542671 (-) 339 WP_000146587.1 hypothetical protein -
  ACFK9X_RS02620 (ACFK9X_02620) - 542658..543113 (-) 456 WP_151115442.1 hypothetical protein -
  ACFK9X_RS02625 (ACFK9X_02625) uvrA 543245..546070 (-) 2826 WP_151115444.1 excinuclease ABC subunit UvrA -
  ACFK9X_RS02630 (ACFK9X_02630) ssb 546318..546848 (+) 531 WP_000168322.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACFK9X_RS02635 (ACFK9X_02635) siiA 548097..548729 (+) 633 WP_151115446.1 SPI-4 type I secretion system auxiliary protein SiiA -
  ACFK9X_RS02640 (ACFK9X_02640) - 548726..550114 (+) 1389 WP_151115448.1 MotA/TolQ/ExbB proton channel family protein -
  ACFK9X_RS02645 (ACFK9X_02645) siiC 550104..551423 (+) 1320 WP_001541306.1 SPI-4 type I secretion system protein SiiC -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19074.15 Da        Isoelectric Point: 5.2456

>NTDB_id=1058222 ACFK9X_RS02630 WP_000168322.1 546318..546848(+) (ssb) [Salmonella sp. WC3]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1058222 ACFK9X_RS02630 WP_000168322.1 546318..546848(+) (ssb) [Salmonella sp. WC3]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTGATGCAGATGCTGGGGGGGCGCCAGGGCGGCGGCGCACCGGCAGGCGGTCAGCAGCAGGGTGGTTGGGGTC
AGCCGCAACAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.978

100

0.744
  ssb Glaesserella parasuis strain SC1401

60.109

100

0.625
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.477

Multiple sequence alignment