Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACFMSI_RS13780 Genome accession   NZ_CP170579
Coordinates   2810116..2810619 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain JB2E56     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2805116..2815619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFMSI_RS13740 (ACFMSI_13740) - 2805477..2805740 (+) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -
  ACFMSI_RS13745 (ACFMSI_13745) - 2805878..2806450 (-) 573 WP_381543567.1 PepSY domain-containing protein -
  ACFMSI_RS13750 (ACFMSI_13750) - 2806630..2806998 (-) 369 WP_000849160.1 YxeA family protein -
  ACFMSI_RS13755 (ACFMSI_13755) - 2807186..2808358 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  ACFMSI_RS13760 (ACFMSI_13760) - 2808696..2809010 (-) 315 Protein_2669 exotoxin beta-grasp domain-containing protein -
  ACFMSI_RS13765 (ACFMSI_13765) - 2809089..2809365 (+) 277 Protein_2670 site-specific integrase -
  ACFMSI_RS13770 (ACFMSI_13770) - 2809358..2809585 (+) 228 Protein_2671 Abi family protein -
  ACFMSI_RS13775 (ACFMSI_13775) rpsR 2809822..2810064 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  ACFMSI_RS13780 (ACFMSI_13780) ssbA 2810116..2810619 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  ACFMSI_RS13785 (ACFMSI_13785) rpsF 2810640..2810936 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  ACFMSI_RS13790 (ACFMSI_13790) - 2811180..2811371 (+) 192 WP_001052481.1 hypothetical protein -
  ACFMSI_RS13795 (ACFMSI_13795) ychF 2811457..2812554 (-) 1098 WP_381543568.1 redox-regulated ATPase YchF -
  ACFMSI_RS13800 (ACFMSI_13800) - 2812566..2812769 (-) 204 WP_000157348.1 DUF951 domain-containing protein -
  ACFMSI_RS13805 (ACFMSI_13805) - 2812799..2813680 (-) 882 WP_000373073.1 mechanosensitive ion channel family protein -
  ACFMSI_RS13810 (ACFMSI_13810) - 2813834..2814679 (-) 846 WP_001825659.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=1058152 ACFMSI_RS13780 WP_000934799.1 2810116..2810619(-) (ssbA) [Staphylococcus aureus strain JB2E56]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1058152 ACFMSI_RS13780 WP_000934799.1 2810116..2810619(-) (ssbA) [Staphylococcus aureus strain JB2E56]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment