Detailed information NTG1058079

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACFU5E_RS02210
• Genome accession: NZ_CP170577
• Coordinates: 479960..480832 (-)
• Length: 290 a.a.
• NCBI ID: WP_378081160.1
• Uniprot ID: -
• Organism: Aeromonas bestiarum strain S1-4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 474960..485832

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFU5E_RS02185 (ACFU5E_02185)	-	476673..477857 (+)	1185	WP_378081156.1	tetratricopeptide repeat protein	-
ACFU5E_RS02190 (ACFU5E_02190)	mutT	477866..478273 (+)	408	WP_098981871.1	8-oxo-dGTP diphosphatase MutT	-
ACFU5E_RS02195 (ACFU5E_02195)	yacG	478363..478557 (-)	195	WP_043139929.1	DNA gyrase inhibitor YacG	-
ACFU5E_RS02200 (ACFU5E_02200)	zapD	478567..479289 (-)	723	WP_378081157.1	cell division protein ZapD	-
ACFU5E_RS02205 (ACFU5E_02205)	coaE	479327..479941 (-)	615	WP_378081159.1	dephospho-CoA kinase	-
ACFU5E_RS02210 (ACFU5E_02210)	pilD	479960..480832 (-)	873	WP_378081160.1	type IVa prepilin peptidase/methyltransferase TapD	Machinery gene
ACFU5E_RS02215 (ACFU5E_02215)	pilC	480895..482136 (-)	1242	WP_098981882.1	type II secretion system F family protein	Machinery gene
ACFU5E_RS02220 (ACFU5E_02220)	pilB	482269..483975 (-)	1707	WP_378081161.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
ACFU5E_RS02225 (ACFU5E_02225)	-	483976..484389 (-)	414	WP_378081162.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ACFU5E_RS02230 (ACFU5E_02230)	nadC	484711..485568 (-)	858	WP_348687474.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32357.63 Da
• Isoelectric Point: 6.4784

>NTDB_id=1058079 ACFU5E_RS02210 WP_378081160.1 479960..480832(-) (pilD) [Aeromonas bestiarum strain S1-4]
MALLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPPYNLMVPRSCCPHCNHP
ITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVAVAMTLTPGWGTLAALLLTWVLMALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLLGGFVSLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=1058079 ACFU5E_RS02210 WP_378081160.1 479960..480832(-) (pilD) [Aeromonas bestiarum strain S1-4]
ATGGCACTTCTCCTCGAGCTGGCACACGGCTTGCCCTGGCTCTATTTCTCGCTGGTATTTCTCTTTTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTACTTCA
ACCCTGATGACGAGGGGGTCGACGAGCCGCCCTACAACCTGATGGTGCCGCGATCCTGCTGCCCCCACTGCAATCACCCC
ATCACGGCACTGGAGAACATCCCCCTGCTAAGCTGGCTCTGGCTCAGGGGTCGCTGCCGAGGCTGCCAGGCTCCCATATC
GGCCCGCTATCCGCTGGTCGAGCTGCTGACGGCGCTGCTCTCGGTAGCCGTTGCCATGACACTCACACCCGGCTGGGGCA
CGTTGGCGGCCCTGCTGCTGACCTGGGTACTGATGGCACTCACCTTCATCGATCTCGACAAGATGCTGCTGCCGGACCAG
CTCACCCTGCCCCTGCTGTGGGGCGGGTTGCTGTTCAATTTGCTGGGCGGTTTTGTGTCGCTTGGCGATGCGGTGATCGG
CGCCATGGCCGGTTATCTGGTGCTATGGAGCCTCTATTGGGCCTTCAAGTTGCTCACCGGCAAGGAGGGCATGGGCTATG
GCGACTTCAAGCTGCTGGCCGCGCTGGGCGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCCTCCCTG
GTTGGCGCCTTCATGGGCATAGGCCTGATCCTGCTGCGCAATCACCATCAGAGCAAACCCATTCCCTTTGGCCCCTATCT
CGCCATCGCGGGCTGGATTGCGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTCACGACTTTCCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.672	98.966	0.61
pilD	Vibrio campbellii strain DS40M4	56.207	100	0.562
pilD	Acinetobacter baumannii D1279779	54.317	95.862	0.521
pilD	Acinetobacter nosocomialis M2	55.597	92.414	0.514
pilD	Neisseria gonorrhoeae MS11	51.087	95.172	0.486