Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFJIS_RS06965 Genome accession   NZ_CP170558
Coordinates   1488517..1489077 (-) Length   186 a.a.
NCBI ID   WP_390347168.1    Uniprot ID   -
Organism   Variovorax boronicumulans strain UC19_11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1483517..1494077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJIS_RS06940 (ACFJIS_06940) - 1483614..1484402 (-) 789 WP_095950686.1 transporter substrate-binding domain-containing protein -
  ACFJIS_RS06945 (ACFJIS_06945) - 1484436..1485224 (-) 789 WP_390347160.1 ABC transporter ATP-binding protein -
  ACFJIS_RS06950 (ACFJIS_06950) - 1485258..1486037 (-) 780 WP_390347162.1 SDR family oxidoreductase -
  ACFJIS_RS06955 (ACFJIS_06955) - 1486052..1486822 (-) 771 WP_390347164.1 2-keto-4-pentenoate hydratase -
  ACFJIS_RS06960 (ACFJIS_06960) - 1486830..1488029 (-) 1200 WP_390347166.1 pyridoxal phosphate-dependent aminotransferase -
  ACFJIS_RS06965 (ACFJIS_06965) ssb 1488517..1489077 (-) 561 WP_390347168.1 single-stranded DNA-binding protein Machinery gene
  ACFJIS_RS06970 (ACFJIS_06970) uvrA 1489262..1492345 (+) 3084 WP_174250277.1 excinuclease ABC subunit UvrA -
  ACFJIS_RS06975 (ACFJIS_06975) - 1492392..1493288 (+) 897 WP_390347171.1 DMT family transporter -
  ACFJIS_RS06980 (ACFJIS_06980) - 1493291..1494058 (-) 768 WP_172438465.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19497.38 Da        Isoelectric Point: 5.9505

>NTDB_id=1058000 ACFJIS_RS06965 WP_390347168.1 1488517..1489077(-) (ssb) [Variovorax boronicumulans strain UC19_11]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGPSDDDGGYSQGGGGGGGYSQGGGGGGGGGGYAPRAPAAAPR
APAPAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=1058000 ACFJIS_RS06965 WP_390347168.1 1488517..1489077(-) (ssb) [Variovorax boronicumulans strain UC19_11]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAACCTGGGGCGCGACCCCGAAATGCGGACATTCCCGAGCGGCGATCA
GGTCGCAAACGTCACCGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGTGAGATGCGCGAAGCCACCGAATGGC
ACCGCATCGTGTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGT
TCGCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAGTACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGCCAGGGCGGTCCGTCGGGTCCGAGCGACGACGACGGCGGCTACTCGCAAGGCGGGGGCGGCG
GCGGTGGTTACTCGCAAGGTGGTGGTGGTGGTGGCGGCGGTGGCGGTTACGCCCCGCGTGCTCCCGCAGCCGCACCGCGT
GCCCCGGCACCGGCGCCGCGCCAGGCGCCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGACATTCCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.02

100

0.538
  ssb Vibrio cholerae strain A1552

46.701

100

0.495
  ssb Neisseria gonorrhoeae MS11

45.109

98.925

0.446
  ssb Neisseria meningitidis MC58

43.478

98.925

0.43

Multiple sequence alignment