Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFJIW_RS20815 Genome accession   NZ_CP170554
Coordinates   5020939..5021508 (-) Length   189 a.a.
NCBI ID   WP_386066926.1    Uniprot ID   -
Organism   Tahibacter sp. UC22_41     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5015939..5026508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJIW_RS20795 (ACFJIW_20795) rfbA 5016197..5017084 (-) 888 WP_386066922.1 glucose-1-phosphate thymidylyltransferase RfbA -
  ACFJIW_RS20800 (ACFJIW_20800) rfbB 5017140..5018195 (-) 1056 WP_386066923.1 dTDP-glucose 4,6-dehydratase -
  ACFJIW_RS20805 (ACFJIW_20805) - 5018394..5019788 (+) 1395 WP_386066924.1 hypothetical protein -
  ACFJIW_RS20810 (ACFJIW_20810) - 5019832..5020569 (-) 738 WP_386066925.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  ACFJIW_RS20815 (ACFJIW_20815) ssb 5020939..5021508 (-) 570 WP_386066926.1 single-stranded DNA-binding protein Machinery gene
  ACFJIW_RS20820 (ACFJIW_20820) - 5021908..5025000 (+) 3093 WP_386066927.1 two-component regulator propeller domain-containing protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 19503.32 Da        Isoelectric Point: 6.0019

>NTDB_id=1057969 ACFJIW_RS20815 WP_386066926.1 5020939..5021508(-) (ssb) [Tahibacter sp. UC22_41]
MARGINKVILVGNVGKDPETRYSAGGMAVTTVSVATSESWKDKQSGEQKEKTEWHRVKFFGRLAEIAGEYLKKGSQVYIE
GSLRTEEYEKDGVKRYSTDIVAAEMQMLGGRPGGGDMEGGGGSRGGYEGGGSRGGGGGYEGGGSRGGGGGGGGGGGYERG
PARGPQSAPQRSAPQPVQNTGFDDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1057969 ACFJIW_RS20815 WP_386066926.1 5020939..5021508(-) (ssb) [Tahibacter sp. UC22_41]
ATGGCACGCGGCATCAACAAAGTCATCCTCGTCGGCAACGTGGGCAAGGACCCCGAGACGCGCTACAGCGCCGGCGGCAT
GGCCGTCACCACGGTCAGCGTGGCCACGTCCGAATCCTGGAAAGACAAGCAGAGCGGCGAGCAGAAGGAAAAGACCGAGT
GGCACCGGGTCAAATTCTTCGGCCGCCTCGCCGAGATCGCCGGCGAGTACCTGAAGAAGGGCAGCCAGGTCTATATCGAA
GGCTCGCTGCGCACCGAGGAATACGAGAAGGACGGCGTCAAGCGCTATTCCACCGACATCGTCGCGGCGGAAATGCAGAT
GCTCGGCGGCCGTCCGGGCGGCGGTGACATGGAAGGCGGCGGCGGTTCGCGCGGCGGCTACGAAGGCGGTGGTTCCCGTG
GCGGCGGCGGTGGTTACGAAGGCGGCGGCTCGCGTGGCGGCGGCGGTGGCGGTGGCGGTGGTGGCGGCTACGAGCGCGGT
CCCGCGCGCGGTCCGCAGTCGGCTCCGCAGCGCAGCGCGCCGCAGCCGGTGCAGAACACCGGTTTCGACGACGACGACAT
TCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.907

100

0.481
  ssb Glaesserella parasuis strain SC1401

45.503

100

0.455
  ssb Neisseria meningitidis MC58

42.781

98.942

0.423
  ssb Neisseria gonorrhoeae MS11

42.781

98.942

0.423

Multiple sequence alignment